Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01143 ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACACCGAAGGAATCAAAAGCCTTCACAGAGACGGAGCAGGCCTTGAGTGGAGGGACAAAGATGCGAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCATCTTTATAATGTTGCGAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATATCGTCCTGGTCGACATGGTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCTTTGAAAGTATTATTAAGTTACTTCTTGTGCATGGCGCTAATCCTTTAATACTAAATGATGATTGTCTAACTGCTCTGGAGGTTGCCAGAGCCAAAGGACATGGTGGTGCTGTTCGTACAATTGAGAGTCATCTGTGCTTGTTCTCGGGTTGGTTACGCGAGCTTCATGGACCTGGGTTTCTGGAAGTAGTAGCTCCTCAGTTGTTATCGAGAAAAGTTTGGGTGGTTGTTTTACCAGTGGGCTCCCGAACTCTTACCAAACCTTACAAGTTGGAGCTTGCCATATATTCTAATATGCAGGATGCACAACCACGTACAGTTATTGCACTGTGGAAGGCCAATTTACATGAACCAAAGCTACACCAGTCTGATCCGTCAGTTACAATTGTTGATCAAACTACTAAAACACGTGTTAGACTTGGGCCTGCAAGTGAGAATGACAAGCAACAAATTACATTTTTTTCTAATGCTTGCAAAGGAATTCCTCAGGCAAGTCCGGCATTCTTGCAAAACAATGCGCCTACAGGTCCACCCACAGCGCCACCAGCTGCAGAAGACACAGAGTTAGCTATGGCCATCAATGCATCCCTTCAGTCTGCCATCCAGGAGAGGCCAGCCTTTCCTGATACACAACCAAACTCTGACGCAAGCTCTTCAAGCACTGCAGTGAATACAGGCAATCATGGTTTTCTTGGCACACCAAATTCAAATACAAATGAAAATGAGTTGGTGCAAGAAACTAAAACTGGTGGCAATGGTGATCACCACCAAAGACATGTCAATGCTAGTGAACTGGATTTCAATCCATCGGCTCCACCAATCGTGGGTGATATTCCAACAGATGGCCCAATTCAGTATCCATCAATTGATTTAAGCCCTGTTGATATGGCATCTTCAGATGTTGAGAAGCTTCCTAATGGAGAAGGAAAAACTGCAAGTGGAAGTGGCTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCGTGCATTCCCTGTGGTCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAAAAATGGGGTTGCCCTGTGTGTCGAGGTAAGATAGACCAGATCATAAAGCTATATCATGTTTGA 1374 0.4498 MGQGQSKDELLYQQVSYGNTEGIKSLHRDGAGLEWRDKDAKTPLIVACMNPHLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFESIIKLLLVHGANPLILNDDCLTALEVARAKGHGGAVRTIESHLCLFSGWLRELHGPGFLEVVAPQLLSRKVWVVVLPVGSRTLTKPYKLELAIYSNMQDAQPRTVIALWKANLHEPKLHQSDPSVTIVDQTTKTRVRLGPASENDKQQITFFSNACKGIPQASPAFLQNNAPTGPPTAPPAAEDTELAMAINASLQSAIQERPAFPDTQPNSDASSSSTAVNTGNHGFLGTPNSNTNENELVQETKTGGNGDHHQRHVNASELDFNPSAPPIVGDIPTDGPIQYPSIDLSPVDMASSDVEKLPNGEGKTASGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRGKIDQIIKLYHV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01143 457 CDD RING-HC_XBAT35-like 402 455 - -
Vian3g01143 457 SMART ANK_2a 39 69 IPR002110 GO:0005515
Vian3g01143 457 SMART ANK_2a 75 104 IPR002110 GO:0005515
Vian3g01143 457 PANTHER ROLLING PEBBLES, ISOFORM B 26 260 - -
Vian3g01143 457 SMART ring_2 406 444 IPR001841 -
Vian3g01143 457 MobiDBLite consensus disorder prediction 292 327 - -
Vian3g01143 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 456 IPR013083 -
Vian3g01143 457 Pfam Zinc finger, C3HC4 type (RING finger) 404 451 - -
Vian3g01143 457 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Vian3g01143 457 Gene3D - 3 151 IPR036770 -
Vian3g01143 457 MobiDBLite consensus disorder prediction 252 271 - -
Vian3g01143 457 Pfam Ankyrin repeats (many copies) 42 96 IPR002110 GO:0005515
Vian3g01143 457 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Vian3g01143 457 ProSiteProfiles Zinc finger RING-type profile. 406 445 IPR001841 -
Vian3g01143 457 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Vian3g01143 457 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Vian3g01143 457 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Vian3g01143 457 SUPERFAMILY RING/U-box 405 451 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01143 396 454 C3H Transcription Factor Family AT3G06140 35.593 3.74e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01143 - - gmx:100789309 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01143 3 12578815 12583530 Vian3g01143 3 12578815 12583530 ECH