Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01138 ATGGATCATGTTATTGGTGGAAAGTTCAAGCTTGGTAGGAAGATTGGGAGTGGATCGTTTGGCGAGCTTTACCTAGGTGTTAATGTACAAAGTGGGGAGGAAGTCGCTGTTAAGCTAGAATCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCTAAATTGTATATGCTTCTCCAAGGGGGAACTGGTATACCCCATCTAAAATGGTTTGGAATTGAGGGTGACTACAATGTCATGGCTATTGACCTCCTTGGGCCTAGTCTTGAAGACTTGTTTAACTATTGTAATAGGAAATTATCTCTGAAAACAGTTCTGATGCTGGCAGATCAGCAAATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCATCGAGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGGAAGGCAAATCAGGTATACATAATTGATTATGGTCTTGCAAAAAAGTACCGGGACCTTCAAACACATAAGCATATACCATACAGGGAAAACAAAAACCTCACTGGAACTGCTCGTTATGCAAGTATTAATACTCATTTGGGAGTTGAGCAAAGCAGAAGAGATGATCTAGAATCTCTTGGTTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCGTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAGTATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTATGCAAGTCCTATCCATCGGAATTCACATCATACTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAGCCCGATTACTCTTATCTTAAGAGACTCTTTCGAGACCTATTCATCCGAGAAGGGTATCAGTTTGACTATGTATTTGATTGGACAATGTTGAAGTATCCACAAATTGGATCCAGCTCTAGAGCTCGACCTAGTGGGAAACCAGTCATAAACCCAGGGCAATCAGGAGAACGACCTTCAGTTATACCAGAGATTCGAGATAGATTCTCAGGTGCAGTTGAGGCATTTGCGAGGAGGAATGGCTCTGGACTTGGTCTACACGGTGATCATTCTAGGCATAAGTCTTCTGACGATGCGCCTTCTTCGTCTAAAGATGTGCAAGCTGATTCTGAGAGGCCTCGGAGTTCTTCTCGTAATGGCAGTTCTTCAAAGAAGCTTGTCTTGTCAAGCAGACCAAGCTCTTCCGGTGAGCCCAGTGAAAGCCGTGTTAGCCGACTGGTCTCAAGCAGTGGCAGACTATCAACAACTCAGAGACTTCAACCTAGTTCTGAGTCTAAAACATCTCTAACTCGGACTTCGGGGACAAGACTTGGCCGTGATGATGCCCTCAGGAGCTTTGAACTCCTGTCACTTAGCACAGGGAAAAGGAAATGA 1380 0.437 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGIEGDYNVMAIDLLGPSLEDLFNYCNRKLSLKTVLMLADQQINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASINTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQIGSSSRARPSGKPVINPGQSGERPSVIPEIRDRFSGAVEAFARRNGSGLGLHGDHSRHKSSDDAPSSSKDVQADSERPRSSSRNGSSSKKLVLSSRPSSSGEPSESRVSRLVSSSGRLSTTQRLQPSSESKTSLTRTSGTRLGRDDALRSFELLSLSTGKRK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01138 459 CDD STKc_CK1_delta_epsilon 8 282 - -
Vian3g01138 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vian3g01138 459 MobiDBLite consensus disorder prediction 375 437 - -
Vian3g01138 459 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01138 459 PANTHER CASEIN KINASE-RELATED 9 392 - -
Vian3g01138 459 MobiDBLite consensus disorder prediction 342 441 - -
Vian3g01138 459 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vian3g01138 459 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Vian3g01138 459 MobiDBLite consensus disorder prediction 347 374 - -
Vian3g01138 459 FunFam Putative Casein kinase I 1 85 - -
Vian3g01138 459 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01138 459 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vian3g01138 459 MobiDBLite consensus disorder prediction 299 324 - -
Vian3g01138 459 FunFam Casein kinase 1-like protein 1 327 - -
Vian3g01138 459 SMART serkin_6 9 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01138 Vian-Chr3 12518642 12523833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01138 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 9.91e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vian3g01138 Pkinase 2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01138 K08960 - qsu:112030604 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01138 3 12518642 12523833 Vian3g01138 3 12518642 12523833 ECH