Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01117 ATGAGAGCTAAGAGTTTGATAAGTAAAAAGCAGATAAGCCTAAGATTGAGAAAAATGATTAAGTGTATATGCTCCGGGGAGCAGTTAAAGGTGGATGAATTAGGTTACTCATCGGAGTCCTTAGCAACCAGAGATTATTCAGCAAGTGGTGGCTTTTCTCGTCCTGGTGAAAACGACACAAAGATTGACAATACCAACATTGAAGAAGCAGAGTCTTCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCTTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATGTCGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTACTGTCGTTCCCAAGATTAAAGTTTCTATATCTAGAAGATGTGAGCCTAATAGACGCCGTTCTCAAAGTGATGCTCAGCCTCCTATGTCAATGCATGCTGTTACTTTAATTCTTGAAGCTGTCTTTCTCAAGGCCAAATCGTTGCAGGCTCTAGGAAGGTTTCAAGATGCTGCCCAGTCATGCAAGACGATTTTAGACACTGTTGAATCAGCTTTACCAGAAGGTTGGCCTGAAAACTTAGTTTCGGACTGTAAACTGCAAGAGACAGTGGGAAATGCTGTGGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGCTCTCCTCAAGACGTTATCTCATCGTTTAGGAGGGCCCTTCTTTATCATTGGAATCTTGGCATTAAAGCCAGCACAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAGCAACTTAGAAGAGGCTGTTCTTCTGCTTCTGATTTTGCTGAGAAAATTTGTTCTTGGATACATTGAATGGGACCCTTCGTTAATTGATCACCTTTCGTTTGCTCTAAGTGTTTCTGGGGAATTCATGACTCTAGCTCAGCAGGTTGAGGAATTGCTTCCTGAAAACATGGACAGAAAAGAAAGATTCTATACTCTAGCTCTTTGTTACTCTGGAGAAGGTGAACATACGACTGCTTTGGATCTTCTAAGGAACTCTCTGAATCACAGAGAGAACTCAGACTGCATAAAGGAGCTACTTCTAGCTTCAAAAGTTTGTGCAGACAAGAAGATTTACACTGAAGAAGGAATCAGATATTCTTTCAAAGCCATTTCTCAGCTGAATGGAAAGTGCATGCAGATGGCAGCTATTGCAAATTGCTTTCTAGGCGTTCTACTGTCATCAAAATCCAGATCAGCCGCTTCTGAATCAGAGAAGATATTTTTGCAGTCCGAAGCACTCAGTGCTCTAAAGGATTCGGAGAGAACGATGAGGGAGAGCGATCCTTACATTGTCCTTCATCTTTGTCTAGAATATGCTGAACAGAGGAAGTTGAGCACTGCTATTGATCATGCAAAGAAACTGATTAAGCTTGAGGGTGGATCTAGTGTCAGTGCATATATTCTTTTAGCGCGGATTTTATCTGCTCAACGAAAGTTTGAAGATGCAGAGCTGGTTATCGATGCAGCTCTAGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTAAGGATTGCACAGGGAAAATTAAAGAATGCGGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGGTCCAAAATAAAAGTTTAGGCACGGCAAGTAAGAAGAGTAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTATATGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTGGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAGGGTTTACTCTTTGAAGCCAGAGGTCTTCATCCAGAGGCTCTGAAATCATTTAGGAAAGCATTAGATATTGATCCCAACCATGTTCCAAGTTTGATATCTACAGCTTGTGTACTCAGACAACTTGGTGGTCAATCATCTTCAATAGTCAGAAGCCTACTCACTGATGCGTTGCGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTGTTCTACAGAGATGATCTGGGGACATCGGCAATGGAAGCCGTTGAATGCTTTGAAGCTGCAGCTTTTCTTGAAGAATCTTCTCCCATCGAACCCTTTAGATAG 2184 0.419 MRAKSLISKKQISLRLRKMIKCICSGEQLKVDELGYSSESLATRDYSASGGFSRPGENDTKIDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDIATVVPKIKVSISRRCEPNRRRSQSDAQPPMSMHAVTLILEAVFLKAKSLQALGRFQDAAQSCKTILDTVESALPEGWPENLVSDCKLQETVGNAVELLPELWKLAGSPQDVISSFRRALLYHWNLGIKASTRIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRSNLEEAVLLLLILLRKFVLGYIEWDPSLIDHLSFALSVSGEFMTLAQQVEELLPENMDRKERFYTLALCYSGEGEHTTALDLLRNSLNHRENSDCIKELLLASKVCADKKIYTEEGIRYSFKAISQLNGKCMQMAAIANCFLGVLLSSKSRSAASESEKIFLQSEALSALKDSERTMRESDPYIVLHLCLEYAEQRKLSTAIDHAKKLIKLEGGSSVSAYILLARILSAQRKFEDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTASKKSKGNRDRRLEMEIWHDLANVYMALSQWQDAEVCLAKSEAINPYSASRWHTKGLLFEARGLHPEALKSFRKALDIDPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYRDDLGTSAMEAVECFEAAAFLEESSPIEPFR 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01117 727 SMART tpr_5 616 649 IPR019734 GO:0005515
Vian3g01117 727 SMART tpr_5 582 615 IPR019734 GO:0005515
Vian3g01117 727 SMART tpr_5 150 183 IPR019734 GO:0005515
Vian3g01117 727 SMART tpr_5 457 490 IPR019734 GO:0005515
Vian3g01117 727 SMART tpr_5 335 368 IPR019734 GO:0005515
Vian3g01117 727 SMART tpr_5 492 525 IPR019734 GO:0005515
Vian3g01117 727 Gene3D Tetratricopeptide repeat domain 59 566 IPR011990 GO:0005515
Vian3g01117 727 Gene3D Tetratricopeptide repeat domain 567 724 IPR011990 GO:0005515
Vian3g01117 727 ProSiteProfiles TPR repeat profile. 616 649 IPR019734 GO:0005515
Vian3g01117 727 SUPERFAMILY TPR-like 151 370 IPR011990 GO:0005515
Vian3g01117 727 Pfam Tetratricopeptide repeat 617 649 IPR019734 GO:0005515
Vian3g01117 727 PANTHER PROTEIN NPG1 20 727 IPR043376 -
Vian3g01117 727 SUPERFAMILY TPR-like 475 697 IPR011990 GO:0005515
Vian3g01117 727 Pfam Tetratricopeptide repeat 466 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01117 Vian-Chr3 12304517 12307687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01117 16 727 Calmodulin-binding Proteins AT4G28600 53.086 0.0 715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01117 3 12304517 12307687 Vian3g01117 3 12304517 12307687 ECH