Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01090 ATGAGTGAACGACTACAGCAAGACTACCTCGTTTCGGAGGAGATCGGCCGGGGAAGATTCGGTACCGTTTACCGATGCTCGTCGGCGGACTCCGGCAAGTCCTACGCCGTTAAATCCATCGACAAGGTAGCCATAAGTGCCGGCGGAGACTCCCTGGACTCCCGATGCCTCTTTACCGAGGCCAAGATCGTTCAGCTGCTCTCCCCTCACCCTCACATCGTCACTCTTCACAGCCTCTACGAAGACGAAACGCACCTCCACATGGTTCTCGACCTCTGTTACGAACCCACGTTTCATCACCAGGTCATGCCGGAACGCGAAGCTGCTTCAGTGATGTGGCAGCTCATGAAAGGCGTGGCCCACTGCCACCGTCTCGGCGTGACCCACCGAGACATAAAGCCCGACAACATTCTTTTCGACGAGGAGAATCGGCTGAAGCTAGCCGATTTCGGCTCGGCCGAGACTTTCAAAGAGGGCGAGTCCATGAGCGGGGTGGTGGGGACACCGCATTACGTGGCGCCGGAGGTCCTCGCCGGAAGGGATTATAACGAGAAAGTTGACGTGTGGAGTTGTGGCGTGGTTTTGTATCAAATGTTGGCGGGGTTTTTGCCTTTTGGAGGTGATTCCCCTGTGGAGATTTTTGAGGCTGTTCTGCGCTCCAGTTTGAGATTCCCAACCCGGGTTTTCTCTTCTGTTTCACCTGCCGCCAAAGATCTCCTTCGTAGAATGTTGTGCAGAGAAGTTTCTAGAAGGTTCTCTGCTGAACAAGTTCTGAGTAAGATATGGCTTTCAAAGAATATGGACACGGGTGGTTTAGCATTATTGAACAGAGTAACTGATCTTTGGCTCTGTACATGTGTGGACTGTGTCTCATGA 876 0.5308 MSERLQQDYLVSEEIGRGRFGTVYRCSSADSGKSYAVKSIDKVAISAGGDSLDSRCLFTEAKIVQLLSPHPHIVTLHSLYEDETHLHMVLDLCYEPTFHHQVMPEREAASVMWQLMKGVAHCHRLGVTHRDIKPDNILFDEENRLKLADFGSAETFKEGESMSGVVGTPHYVAPEVLAGRDYNEKVDVWSCGVVLYQMLAGFLPFGGDSPVEIFEAVLRSSLRFPTRVFSSVSPAAKDLLRRMLCREVSRRFSAEQVLSKIWLSKNMDTGGLALLNRVTDLWLCTCVDCVS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01090 291 FunFam Maternal embryonic leucine zipper kinase 2 273 - -
Vian3g01090 291 Pfam Protein kinase domain 11 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01090 291 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Vian3g01090 291 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vian3g01090 291 Gene3D Transferase(Phosphotransferase) domain 1 95 272 - -
Vian3g01090 291 SUPERFAMILY Protein kinase-like (PK-like) 4 267 IPR011009 -
Vian3g01090 291 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 266 - -
Vian3g01090 291 SMART serkin_6 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01090 291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Vian3g01090 291 CDD STKc_CAMK 8 262 - -
Vian3g01090 291 ProSiteProfiles Protein kinase domain profile. 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01090 Vian-Chr3 11946326 11947285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01090 9 263 EF-hand Containing Proteins AT1G50700 40.684 4.18e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian3g01090 Pkinase 1.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01090 K08794 - gmx:547731 463.381