Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01087 ATGGAACGTGCGGTTCTTGATGGTATCATCAATAGGCTGCTCGAAGTCAGAACCAGGCCCGGCAAACAGGTGCAACTTTCTGAGCCTGAAATCAAGCAGCTTTGTCTTGTCTCCAGGGATATCTTCTCCAACCAGCCCAACCTCTTGGAACTCGAGGCACCCCTCAAGATCTGTGGAGATATCCATGGTCAATATTCTGACCTTCTGCGACTTTTTGACTACGGTGGATTGCCTCCTCGTTCTAATTACTTATTTTTAGGGGACTATGTTGATCGTGGGAAGCAAAGCTTGGAGACTATATGTCTCCTTCTGGCTTATAAAATAAAATATCCTAATAACTTCTTTCTTCTGAGGGGCAACCATGAATGTGCTTCTATAAACCGAATCTATGGATTTTATGATGAGTGTAAACGAAGATTCAATGTGAGGCTTTGGAAAGTGTTCACAGAATGTTTCAACTGCTTGCCAGTGGCAGCTCTGATTGATGAAAAAATACTCTGCATGCATGGTGGACTGTCTCCTGACTTACACAATTTCAATCAGATAAAGAGTTTGCCGCGTCCTACTGAAGTACCTGAAACTGGTCTACTATGTGACCTCCTTTGGTCTGATCCTAGCAGTGACATTCGGGGTTGGGGAGAAAACGAGCGTGGAGTTTCCTATACTTTTGGTGCTGACAGGGTCACTGAATTCCTTCAGAAGCATGATCTTGATTTGATTTGCAGGGCCCATCAGGTTGTGGAAGACGGATATGAATTCTTTGCTGACAGACAACTTGTGACTATCTTCTCGGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCAATGATGACTGTTGATGAGTCACTCGTCTGCTCTTTTCAAATATTGAAGCCTGTAGATAAAAAGCCTAATAAGTTTCGCTTTGGGAGCACAACTACAGTTAAACCTACTACACCAACAAAAGCAAAGCAATCATTTTTTGGTGCTAAAGCTTGA 984 0.4319 MERAVLDGIINRLLEVRTRPGKQVQLSEPEIKQLCLVSRDIFSNQPNLLELEAPLKICGDIHGQYSDLLRLFDYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPNNFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTECFNCLPVAALIDEKILCMHGGLSPDLHNFNQIKSLPRPTEVPETGLLCDLLWSDPSSDIRGWGENERGVSYTFGADRVTEFLQKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMTVDESLVCSFQILKPVDKKPNKFRFGSTTTVKPTTPTKAKQSFFGAKA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01087 327 Gene3D - 1 305 IPR029052 -
Vian3g01087 327 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 299 - -
Vian3g01087 327 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vian3g01087 327 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vian3g01087 327 SUPERFAMILY Metallo-dependent phosphatases 18 303 IPR029052 -
Vian3g01087 327 CDD MPP_PP1_PPKL 5 294 - -
Vian3g01087 327 Pfam Calcineurin-like phosphoesterase 56 246 IPR004843 GO:0016787
Vian3g01087 327 FunFam Serine/threonine-protein phosphatase 52 306 - -
Vian3g01087 327 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vian3g01087 327 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vian3g01087 327 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vian3g01087 327 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vian3g01087 327 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vian3g01087 327 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vian3g01087 327 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vian3g01087 327 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01087 Vian-Chr3 11884809 11888875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01087 33 239 Calmodulin-binding Proteins AT5G63870 32.258 6.55e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01087 K06269 - gmx:100791655 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00992 6 27217369 27221456 Vian3g01087 3 11884809 11888875 ECH
Vian3g01087 3 11884809 11888875 Vian3g01087 3 11884809 11888875 ECH