Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01084 ATGGATTCCACCTCCTTCTTCAATTCAGCCTCTTCCGATTTCTCCTCCGAATCTTCCTCTCCGGAGGCCTTCTCCTGGGAGGGCTACCTCCCCTTCAACGAGAACGACCCGGAGGAGATGCTCCTCTACGGCATGATCGCCGGCGCCACCACAGTCGACCGCGCCGCCGACCGAGCGGGCTCTGAGGAGAGTGAGGCGGTGCAGAAGGAGAAGTCCTACCGCGGAGTGCGGCGGCGCCCGTGGGGGAAGTTTGCGGCGGAGATTAGAGACTCCACACGGCACGGGATGAGGGTGTGGCTTGGGACATTCGACAGCGCGGAAGCCGCGGCTTTGGCTTACGACCAAGCAGCGTTTTCCATGCGTGGCCCCGCCGCGATTCTGAACTTCCCCGTTGATATCGTTAGAGAATCGCTCAGAGAGATGAACTACACGGTGGACAGCAATGAAGAAGGATGCTCCCCTGTTGTCGCTCTCAAGAGGAAACACTCGTTGCGGAGGAAAATTGGTGTGAAGAAAAACAACAAACAGAGTAGCGTAGACAATGCGGTCGTGTTTGAAGACCTTGGTCCTGACTACTTGGAACAGTTGTTGATGTCCTCTGATCGTATTCCCTCCTCCTCCTGA 624 0.5705 MDSTSFFNSASSDFSSESSSPEAFSWEGYLPFNENDPEEMLLYGMIAGATTVDRAADRAGSEESEAVQKEKSYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGPAAILNFPVDIVRESLREMNYTVDSNEEGCSPVVALKRKHSLRRKIGVKKNNKQSSVDNAVVFEDLGPDYLEQLLMSSDRIPSSS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01084 207 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Vian3g01084 207 FunFam Ethylene-responsive transcription factor 2 71 131 - -
Vian3g01084 207 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677
Vian3g01084 207 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Vian3g01084 207 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Vian3g01084 207 CDD AP2 71 132 IPR001471 GO:0003700|GO:0006355
Vian3g01084 207 PANTHER DNA-BINDING DOMAIN 27 198 IPR044808 GO:0003700|GO:0009873
Vian3g01084 207 MobiDBLite consensus disorder prediction 1 23 - -
Vian3g01084 207 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Vian3g01084 207 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vian3g01084 207 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01084 Vian-Chr3 11853365 11853988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01084 30 201 AP2-EREBP Transcription Factor Family AT3G23240 61.326 1.84e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian3g01084 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01084 K14516 - gmx:100790598 322.783