Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01081 ATGCAAAAGAACAAAAACCAAACCATGGATGAGGAAGGATCAAGGGGAAAAACCAAGGACGAGCCTGGAGATGTCCGTTACCGGGGGGTTCGCCGGCGGCCCTGGGGGAAGTTCGCCGCGGAGATTCGAGACTCCACCAGGCAAGGCCAAAGGGTGTGGCTGGGAACTTTCAACACGGCGGAGGAAGCAGCCAGAGCCTATGATAGAGCTGCTTATGCCATGAGAGGTCCATTCGCAATCCTGAACTTCCCTGAGGAGTACCCTATGACTGCTGGTGGTGCCACTAATGCCGCCACTCATTCCTCTGTTGCTTCGTCGTCCTCTTCCTCTTCCTCCAGGCATGCAAATGTGGAAGCCAGAGGAAGAAGTGACCAAGGAAGACAAGTGTTTGAGTTCGAGTACTTAGACGACAAATTGTTGGAGGAGCTTCTAGACTTTGAAGACAAAAAGAAAAGGGGCCCCTGA 465 0.529 MQKNKNQTMDEEGSRGKTKDEPGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGPFAILNFPEEYPMTAGGATNAATHSSVASSSSSSSSRHANVEARGRSDQGRQVFEFEYLDDKLLEELLDFEDKKKRGP 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01081 154 PANTHER DNA-BINDING DOMAIN 15 149 IPR044808 GO:0003700|GO:0009873
Vian3g01081 154 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vian3g01081 154 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Vian3g01081 154 MobiDBLite consensus disorder prediction 94 116 - -
Vian3g01081 154 MobiDBLite consensus disorder prediction 89 124 - -
Vian3g01081 154 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Vian3g01081 154 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Vian3g01081 154 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Vian3g01081 154 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Vian3g01081 154 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Vian3g01081 154 MobiDBLite consensus disorder prediction 1 30 - -
Vian3g01081 154 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Vian3g01081 154 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01081 Vian-Chr3 11798508 11798972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01081 26 151 AP2-EREBP Transcription Factor Family AT3G23230 62.698 2.00e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian3g01081 AP2 2.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01081 - - gmx:100775830 211.46