Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01080 ATGAACAGCGTCCCTCCTCCACCCAAAAAGAGAAGTGACATTAAATCTGAGAGAACCAATTGGTCTGCATTTTTGTCTTTGACATCTGGGATGGATCTTGCAAGCAGAAGATACTTGATTTATGTCTCACAACATGTGTCACAATCGGAAGCACTTTCTCCGGTCACAAGTCCAGGGGGTTCGTTCTTTCATCCTCATCAGCATTCTTCTAGCACCAGTTTTCCCATAATCGCAATTGCCATAATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACAGAATTGATATTCTAAGACGTTTTTCTCCATCTAGAAGGCGTGAAGATCCATCAGCCATGTACTCACCAGGCACAGAAGCTCGTGGACTGGATGAGGCAATGATCCGGTTAATCCCTGTGATTCAATACAAGACACAGGGGGATGATAGAGAATCTGGAGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTCAGGATTATACCAAATTGCAGTCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGTCCTCTCTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACGTTGAGCAGCTTCTTGCACTAAGGTCTTCTTCCCCTCCGGATCAAACTCCACCAAGGGAAAACCACATAGGAAGAGATGAAGATTTTGTTGTAATTGAATTGGGTAATATCCACGATAGAAGCCAAAATTTGCGAGAGAGAGGAAATGGTTTGGAGTTACCATCACCAACATCTCTTATTAGTTCTTGTACGCCAAGGAAATTGGAACAAGGAAATGTGCAGAAGAAAGCAATGAAACTGCATAAAGTGACGAGCATGGGAGATGAGTGTATTGATATTAGAGCAAAAGATAACCAGTTCTCAGTGCAACCAATCAGAAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCTGCAGAACAGGCAAGTCAATGAAGTCAGCACCACCGAAGGCTGCAGTGGTAGTGGTAGCAATAGAGTCAAGAGATCATTCTTTTCCTTCGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGAACCCTGA 1167 0.4327 MNSVPPPPKKRSDIKSERTNWSAFLSLTSGMDLASRRYLIYVSQHVSQSEALSPVTSPGGSFFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSAMYSPGTEARGLDEAMIRLIPVIQYKTQGDDRESGECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHVEQLLALRSSSPPDQTPPRENHIGRDEDFVVIELGNIHDRSQNLRERGNGLELPSPTSLISSCTPRKLEQGNVQKKAMKLHKVTSMGDECIDIRAKDNQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVSTTEGCSGSGSNRVKRSFFSFGHGSRSRSSVQPVSLEP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01080 388 PANTHER RING-H2 FINGER PROTEIN ATL16 63 384 IPR044600 GO:0016567|GO:0016740
Vian3g01080 388 SMART ring_2 161 202 IPR001841 -
Vian3g01080 388 Pfam Ring finger domain 160 203 IPR001841 -
Vian3g01080 388 SUPERFAMILY RING/U-box 152 209 - -
Vian3g01080 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 211 IPR013083 -
Vian3g01080 388 FunFam E3 ubiquitin-protein ligase ATL6 125 209 - -
Vian3g01080 388 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Vian3g01080 388 MobiDBLite consensus disorder prediction 368 388 - -
Vian3g01080 388 CDD RING-H2_EL5-like 160 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01080 Vian-Chr3 11788106 11791814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01080 65 388 C3H Transcription Factor Family AT1G04360 53.221 1.36e-103 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01080 - - gmx:100775286 567.77