Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01070 ATGGGACTCGAGGAGGTGGACGCGCGCGAGTTGCGGCGGCAGACGGTGACTCGGTTCTCGGAGGATCTTCGATCTGTGTGTTTTGCGGCGGCAGACGACGATCATGTCGTTCAGGAGGTCAAGTTGTTGGCAAAGAAGGAGGATCTGCTCTTGGAATGGTTTTGCGACGGTGAGGAAGATGAGATTGAATCACACAAAAGGGTGTTGGTGAGAAGGTTGATCTCTGGTTCTTCAGAGAGGAGAGAAGATGAGGTTGAAGTTGGCGAGGAAGAGGAGAAGGTTTCCACGTATCTGAGATTTACTATGCCACGTGTTATTAAATGCCAGCTCACCATACCACAAGTAACTCTGGCAAATCCTTGGTGGACAGGTCAGGGAGGGTTATCTGGGGTTGACCCAGGAACCCATTCGCCTGGCCTAAGCAAACGCCACACAGACCTTGCAATCAATGAAACCAGTGGTGGCCATAATATAGAAGAAGATGAAGACAATAGAGATGAACCGAGAGAAGGTGCAGTTGAGGTTGGAACTCGCAGACCGAGAGGAAGACCTCCCGGATCCAAAAACAAGCCAAAACCACCAATTTTCGTAACAAGGGACAGCCCAAACGCCCTGAGGAGTCATGTGATGGAGATAACTGGAGGGGCTGATGTTGCCGAAAGTGTGGCCCAATTCGCAAGAAGGCGTCAGCGTGGGGTTTGTGTACTCAGTGGGAGTGGCTCCGTGGCCAATGTCACTCTTAGACAACCTGCTGCTCCTGGAGCTGTGGTGGCACTTCATGGGAGGTTTGAGATTTTGTCCCTCACTGGGACTTTTTTACCTGGTCCTGCTCCTCCAGGATCCACAGGACTCACAGTGTATCTTGCTGGAGGCCAGGGCCAAGTACTAGGAGGGAGTGTTGTTGGGCCTCTAGTTGCCACAGGACCAGTGATGGTGATTGCTGCAACTTTTTCTAATGCAACATATGAGAGACTTCCACTTGATGAAGATGAAGAAGGGCCTAGTTCCGCCGCCGCGGTACAAGGAGGAGGATCGCCACCGCCACTTGGAATTGGAAGCGGTGGGGGTGGGCAATTGCAGGGTGGGATTCCAGATCCATCATCTTTGCCTTTGTATAATCTTCCACCGAATGGAGGAGGGGGGCAAGTGGGGCATGAAGCCCTTGCTTGGGCTCATGGACGGACACCTTTCTGA 1194 0.5235 MGLEEVDARELRRQTVTRFSEDLRSVCFAAADDDHVVQEVKLLAKKEDLLLEWFCDGEEDEIESHKRVLVRRLISGSSERREDEVEVGEEEEKVSTYLRFTMPRVIKCQLTIPQVTLANPWWTGQGGLSGVDPGTHSPGLSKRHTDLAINETSGGHNIEEDEDNRDEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEITGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVLGGSVVGPLVATGPVMVIAATFSNATYERLPLDEDEEGPSSAAAVQGGGSPPPLGIGSGGGGQLQGGIPDPSSLPLYNLPPNGGGGQVGHEALAWAHGRTPF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01070 397 ProSiteProfiles PPC domain profile profile. 202 339 IPR005175 -
Vian3g01070 397 MobiDBLite consensus disorder prediction 155 177 - -
Vian3g01070 397 Gene3D - 205 333 - -
Vian3g01070 397 Pfam Plants and Prokaryotes Conserved (PCC) domain 206 319 IPR005175 -
Vian3g01070 397 CDD DUF296 206 317 IPR005175 -
Vian3g01070 397 FunFam AT-hook motif nuclear-localized protein 205 332 - -
Vian3g01070 397 SUPERFAMILY AF0104/ALDC/Ptd012-like 203 330 - -
Vian3g01070 397 MobiDBLite consensus disorder prediction 327 383 - -
Vian3g01070 397 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 153 391 IPR014476 GO:0003680
Vian3g01070 397 MobiDBLite consensus disorder prediction 149 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01070 Vian-Chr3 11688621 11697695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01070 117 397 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 61.301 4.39e-102 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01070 - - var:108341460 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01070 3 11688621 11697695 Vian3g01070 3 11688621 11697695 ECH