Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01053 ATGTTGCAGGATGTTTTTGATCAGCCACTTCCACCAAAGCACTTGCTGCAGGAAGAAATTTCAAGCCCTTTTAGTAGTGCTCGAATTTTCGAATTTTGTAACGCTGAATTTTTCCCAGAGGCTTTGCCAAATTCTGAGGTTACTTCCAGCTCAAACTGTTGCTATGAGGAGAACTCCTCGTATGCCACAACAAACAAATCTTTAACTGTAGATGTAGAAAATAAATTGAATAGCAATAGCAACACAGTCACCACGCCAACTAGCATTACCACCACCAACAACAACAACACAACCAACAGTAGTAACCTGTCTATTATCTTAGACCCCCAAGATGAAATGGACAATAATGACATCGCTGCCTCCATAGACTTCTCACTATCTCCATCTTTCAATGTTCCTCCATTTCTCCCAGTCACATCCCAGCAAGAACAGTTTGATTTCTCTTATGTGCAGCCTCAGGTCCAATTACCAGCATTTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCACTGACCCCGTTGCACCTCCACTTATGGGGGCTCCATTACCTTCTGTATTTGAAGAGGATTGCATATCTTCTGTTTCTTCTTATGTGCCTCTCAACCCTTCATCTCCTTGCACTTATCTCAGTCCTGGCATGCCACCATACATGCCTACCGGCCCCCTTACTAGCGTCTTATCAACGGATAGTTCTGGATATTTTGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACACAAGAATTGGAATACCAAGGAGAAAATGGAAGAATGTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCAGACCTTCAGGCACTTGGTACTGAGAGTCAGCAACTAGTTCCCGGGGGTGGTAGTTCTGCCACTCTAACACCTGAAATCTCTAACTTAGAGGACTCCTCATTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATCAATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTCGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAAACCAATAGAACTACTAGTAGCAATCATGAAGATGATGACGAAGAAGAAGTAGTTGTGAAGGATGAAGATGATATGGTTGATTCCTCAGATATTTTTGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1242 0.4243 MLQDVFDQPLPPKHLLQEEISSPFSSARIFEFCNAEFFPEALPNSEVTSSSNCCYEENSSYATTNKSLTVDVENKLNSNSNTVTTPTSITTTNNNNTTNSSNLSIILDPQDEMDNNDIAASIDFSLSPSFNVPPFLPVTSQQEQFDFSYVQPQVQLPAFSVVEGFSQYPTDPVAPPLMGAPLPSVFEEDCISSVSSYVPLNPSSPCTYLSPGMPPYMPTGPLTSVLSTDSSGYFGGNILLGSELQTQELEYQGENGRMYCTDSIQRVFNPPDLQALGTESQQLVPGGGSSATLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEDDDEEEVVVKDEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01053 413 MobiDBLite consensus disorder prediction 77 101 - -
Vian3g01053 413 ProSiteProfiles CCT domain profile. 315 357 IPR010402 GO:0005515
Vian3g01053 413 MobiDBLite consensus disorder prediction 350 372 - -
Vian3g01053 413 MobiDBLite consensus disorder prediction 350 379 - -
Vian3g01053 413 Pfam CCT motif 315 357 IPR010402 GO:0005515
Vian3g01053 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 40 374 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01053 Vian-Chr3 11496662 11499946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01053 285 364 C2C2-CO-like Transcription Factor Family AT5G24930 38.824 4.39e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian3g01053 CCT 3.5e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01053 - - gmx:100803778 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01053 3 11496662 11499946 Vian3g01053 3 11496662 11499946 ECH