Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01038 ATGGGATGGGGAATGATAGAGGAACAAGGATGGAGGAAGGGTCCTTGGACTGCTGAAGAAGACAGATTGCTCATTCAGTATGTCAGATTGCATGGTGAAGGCAGATGGAACTCTGTTGCAAGACTTGCAGGACTGAAAAGAAATGGAAAGAGCTGCAGACTGAGATGGGTGAATTACCTGAGACCAGACCTAAAGAAGGGTCAGATAACACCACAGGAAGAAAGCATAATTCAGGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGCTTGCCAGGAAGAACTGACAATGAGATCAAGAACTATTGGAGGACCCATTTCAAGAAAAAGGCTAAAAGCCCTTCTGATGCTGCTGAGAAGGCTAGAATCCGTTCCTCAAGGAGGCAGCAATTTCAACAGCAACAACTGCAGTTGAAGCATCAGCAGCAGGTTCAGCAGCAGCAGCAGCAATTCCAATTCAACTTGGACATAAAAGGGATCATAAACTTGCTTGAAGAAAATGATCACAGAGTCCCTTCTACATCTCAAGAGACACAAGAAATGGTTAACATGTGTCCAAACACTTCAGAGCAGCAGGGTTACTTCTACTCTATGTTCAATGTCAGTGACAATGTCTCTGCACCAGAGTCCTCAAACGAAGAAATTCTCTGGGATGGACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCAAGTGCTACAAGCAAAACTAGTTTACACAATTTAGTCACTCCTTTCAGTTAA 762 0.4423 MGWGMIEEQGWRKGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARIRSSRRQQFQQQQLQLKHQQQVQQQQQQFQFNLDIKGIINLLEENDHRVPSTSQETQEMVNMCPNTSEQQGYFYSMFNVSDNVSAPESSNEEILWDGLWNLDDVLCNFNAASATSKTSLHNLVTPFS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01038 253 CDD SANT 70 111 IPR001005 -
Vian3g01038 253 Gene3D - 13 65 - -
Vian3g01038 253 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vian3g01038 253 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vian3g01038 253 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 226 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vian3g01038 253 SMART sant 65 113 IPR001005 -
Vian3g01038 253 SMART sant 12 62 IPR001005 -
Vian3g01038 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Vian3g01038 253 FunFam MYB-related transcription factor 70 114 - -
Vian3g01038 253 Gene3D - 70 114 - -
Vian3g01038 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Vian3g01038 253 CDD SANT 15 60 IPR001005 -
Vian3g01038 253 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Vian3g01038 253 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vian3g01038 253 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vian3g01038 253 FunFam Myb transcription factor 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01038 Vian-Chr3 11326973 11327887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01038 5 252 MYB Transcription Factor Family AT4G13480 54.647 6.29e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g01038 Myb_DNA-binding 7.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01038 K09422 - gmx:100782089 436.032