Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01034 ATGGAGCAGGAAGAGCATGAAGTATACGGTGCAGACATTCCCGACGAGGAGGTTGACATGGACGCCGACGCCGACCAACAAGACGACCAACTTCCCTCCAATCACACAACCAAGTTGCATCAAGTATTTTCGTCAAATTCTCAGGAATTGGAGGATATGAGGAAGAGGCTGAAGGAGATCGAGGAAGAAGCTAGCGCGCTTCGCGAAATGCAGGCCAAGGTTGAAAAAGAGATGGGAGCTGTTCAAGATTCGTCTGGTCCATCTGCAACTCAAGCTGAAAAGGAAGAAGTGGATGCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACGCCTGAAGAAGTCCAGCAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTTACCATACTGACAGACAAATTTGGTCAACCAAAAGGGTTTGCTTATGTAGAATTTGTGGAGATTGATGCAGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTAAAGGTCTCAGCCAAGCGTACAAACGTTCCTGGAATGAAGCAGTATTATGGAAGAAGGCCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTGCTCCATTCTTTCCACCGTATAGTTATGGAAGGGTTCCAAGGTATAGAAGACCCACACGATACAGGCCATACTAG 675 0.4652 MEQEEHEVYGADIPDEEVDMDADADQQDDQLPSNHTTKLHQVFSSNSQELEDMRKRLKEIEEEASALREMQAKVEKEMGAVQDSSGPSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPTGFRSRRPFMPAPFFPPYSYGRVPRYRRPTRYRPY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01034 224 MobiDBLite consensus disorder prediction 1 26 - -
Vian3g01034 224 MobiDBLite consensus disorder prediction 27 48 - -
Vian3g01034 224 FunFam Polyadenylate-binding protein 1 94 180 - -
Vian3g01034 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vian3g01034 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 176 IPR000504 GO:0003723
Vian3g01034 224 SMART rrm1_1 101 172 IPR000504 GO:0003723
Vian3g01034 224 MobiDBLite consensus disorder prediction 1 50 - -
Vian3g01034 224 CDD RRM_II_PABPs 101 172 - -
Vian3g01034 224 Gene3D - 23 173 IPR012677 -
Vian3g01034 224 Coils Coil 43 77 - -
Vian3g01034 224 SUPERFAMILY RNA-binding domain, RBD 88 197 IPR035979 GO:0003676
Vian3g01034 224 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 23 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01034 Vian-Chr3 11280360 11287699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01034 101 172 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.46e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01034 K14396 - gmx:100527545 352.058