Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01029 ATGTTGAAAAGTGGAAGGGCTAGTGAGAAATGTCAGAAAGAGAAGAGAAAGACTATTAATGGAGACGATTTGTTATGGGCAATGGCCACTTTAGGTTTTGAAGACTACATAGAGCCCCTTAAGGTGTACCTGGCAAGGTACAGAGAGGGTGACACCAAAGGATCTGCTAGAGGTGGTGATGGATCTGCTAGACCAGATCAAGTTGGCCTTGCAGGTCAAAATTCTCAGATAACAGAAACATCATTAATAGAGAAAGAAGAAAGTTACAGTGAATTTGGTCGGTAA 285 0.4175 MLKSGRASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDTKGSARGGDGSARPDQVGLAGQNSQITETSLIEKEESYSEFGR 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01029 94 SUPERFAMILY Histone-fold 6 58 IPR009072 GO:0046982
Vian3g01029 94 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 73 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vian3g01029 94 MobiDBLite consensus disorder prediction 52 94 - -
Vian3g01029 94 MobiDBLite consensus disorder prediction 68 83 - -
Vian3g01029 94 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 5 28 IPR003958 -
Vian3g01029 94 Gene3D Histone, subunit A 3 92 IPR009072 GO:0046982
Vian3g01029 94 PRINTS CCAAT-binding transcription factor subunit A signature 11 29 - -
Vian3g01029 94 PRINTS CCAAT-binding transcription factor subunit A signature 30 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01029 Vian-Chr3 11198728 11202233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01029 7 91 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.517 7.95e-35 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian3g01029 CBFD_NFYB_HMF 1.7e-05 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01029 K08065 - gmx:100815883 138.658