Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01012 ATGGAAACAGGATCAAAGTTTTTGGACAATGCAATGATAGGGGTTTCTCATTCTCTTACTGCCTCTAACCATCTTCATGTGTTAAGAAGTGGGGAAAACTCATCCATAACATCATCTCAACAACTTCTTTCATGTTCAAATTCTACTTCAATGAAAGAAGAGGCACCTTTAGCCACATGGATTAGTCATATCCCTGAAAAGTTCAATGGCCCTCAAGACATAAAAAATGTGAGAGAGAGAAACCGATCCAATTCTATCTTCCCAGCCTCGGGCACAAAAAACAGCTCCATTCCTCTAAATCTTTTGGAAACTCTCCCACCATTGACTATGGCACCATGTTTTGATGAGCCTGTTGCTTCTTTAGCCTCTTCTTCTGCCCCACCCAATTTTCCAAACTTGACTTTGGTTTTGCAGGAACCCTCCATGGTGTACTCATCATCATCAAATATGAAAAGTGGTGAAGTCATGTCTGTAACTTCTAACCCCACCTATCAAGTTCCTCACTTTGGGCAAAACCAGCATCAAGGATGTAGTGATGCACACAAAACGAACAAGAATCTGAAGTCTTTCAACGAGAATTGGTTGAGTAGCACTAGGACTCAGCCTATGAAGTATGGTGGAAGAGGCAAGCTGTTTAAAGGGGTGAGGCAGAGACACTGGGGGAAATGGGTTGCGGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTGAGAGGAGAATATGCACAGTTGAACTTCCCAGATCTCAAGCATGTAATCCAGGCCAATTCTCTGAATGGAACCACTGCAGCACTTGTGGAGGCAAAACTACAAGCAATATCTCAAGGTGTTTCTTCTCACAGGAAGCCTACTGACTCACCAGCAGGCTTAAGCAACAAGCACACTGATGAGAATGGCAAATTGAAAAGTACAAATGACAAGAATTCAACCATGAAGGAGTGGCAGTTTGATAATACTGAGAAAAGCAAAAGTATACACCATGATATATCAGATGTGGAAACTTTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACAGTATTTGGGATGAACTTTTGGTCTCTAATTCATGA 1137 0.4204 METGSKFLDNAMIGVSHSLTASNHLHVLRSGENSSITSSQQLLSCSNSTSMKEEAPLATWISHIPEKFNGPQDIKNVRERNRSNSIFPASGTKNSSIPLNLLETLPPLTMAPCFDEPVASLASSSAPPNFPNLTLVLQEPSMVYSSSSNMKSGEVMSVTSNPTYQVPHFGQNQHQGCSDAHKTNKNLKSFNENWLSSTRTQPMKYGGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVSSHRKPTDSPAGLSNKHTDENGKLKSTNDKNSTMKEWQFDNTEKSKSIHHDISDVETFQLSRMPSLDMDSIWDELLVSNS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01012 378 PRINTS Ethylene responsive element binding protein signature 234 250 IPR001471 GO:0003700|GO:0006355
Vian3g01012 378 PRINTS Ethylene responsive element binding protein signature 212 223 IPR001471 GO:0003700|GO:0006355
Vian3g01012 378 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 59 373 - -
Vian3g01012 378 CDD AP2 210 270 IPR001471 GO:0003700|GO:0006355
Vian3g01012 378 MobiDBLite consensus disorder prediction 316 333 - -
Vian3g01012 378 SUPERFAMILY DNA-binding domain 211 269 IPR016177 GO:0003677
Vian3g01012 378 SMART rav1_2 211 274 IPR001471 GO:0003700|GO:0006355
Vian3g01012 378 FunFam Ethylene-responsive transcription factor 2 210 269 - -
Vian3g01012 378 Gene3D AP2/ERF domain 211 269 IPR036955 GO:0003700|GO:0006355
Vian3g01012 378 MobiDBLite consensus disorder prediction 296 314 - -
Vian3g01012 378 ProSiteProfiles AP2/ERF domain profile. 211 268 IPR001471 GO:0003700|GO:0006355
Vian3g01012 378 MobiDBLite consensus disorder prediction 296 333 - -
Vian3g01012 378 Pfam AP2 domain 212 260 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01012 Vian-Chr3 11063112 11064248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01012 62 373 AP2-EREBP Transcription Factor Family AT4G13620 42.236 1.42e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian3g01012 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01012 - - gmx:100819431 557.37