Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01009 ATGGCTATGAACAAAATTCTAAAGCTCATCCAACTTATTCTTCTGATCGCAGTAGCTTCAAAAGCAGTGTCTCAACCCTCTCCAGATTGCCCCAAAAGCTGTGGCAATCTAAGCATACCTTACCCTTTTGGGACACGCGAGGGCTGTTATATGAACGACACTTTCCTCGTCACTTGCAACCATGATAACTCCTCCACGTCCATTCCTCTATTGGGAACAAACAACATACTGGTGCTCAACATATCACTAGAAGATGGGGAAGTTATAGTTTCAAGTCCCGTAGTCCGTGATTGCTATGGCACCAAAAGCAAAAACTCAAACGACCAAAATGGTCTCAATTTGACCCACTTTTCAATCTCACCAAGCAGGAACAAATTCACAGCAGTTGGTTGTGGCACGGTTGGAGTATTCATCGGTTACGATAGCAGCAGAAAACATGTTACAACAAGAGGGTGTGTATCCATGTGCGACACGCTTGGTGAAATCAGAAACGGATCATGCGATGGCATTGGTTGTTGCCAAATCGGTGTTCCCGATGGAGTGTATGGTTTTGCAATGAAAAGTTGGAGTATAAGCAACAACTCCACCGTACGTGACGGTGACTTCAATCCTTGTAACTATGCGTTTACGGTTGCGGAAGGCTATTACAAGTTCGACACAACAAATCTTAAGAGCCTCGAGAATCCGAGGTTGCCCTTGGTGCTTGATTGGGCTGTGGGAAATCAAACGTGCGAAGAGGCGCAACAACATCCTAGTAGCTATGCGTGCAAGGATAAGAACAGTTATTGCCTCGATTCAACGAATGGGATTGGTTATCGTTGCAAATGCAATCATGGTGGAAACCCTTACCTCTACGATGGTTGCCATGATAAGGATGAATGCGCTTTGAACAGCAATCCATGCGTCCACAAGAAAAGCTGCAAAAACGCCCCTGGAGAAGGTTTGAAGTGCTCATGTCCAAAGGGCCACGAAGGAGATGGATTGAGAAATGGCCAAGGCTGCAGACCCAAAAGAGACAAAAACACAGGGAATCTTATTCTTATAATTGGATTGAGTTTGAGCTTAAGTCTATTGGCAGTGGTTGTGGGATGCCTGAACATATACCCTCAATTCCGTGAAAGAAAGCTCATGAAAATCAGAGAGAATTATTTTAAGAAAAATGGTGGCATGTTATTGCAAAGGCAGATTGATCTGGTCAATGGCTCAACCGAGAGAGCCACAATTTTCACTGCTGAGGAGCTCAAGAAAGCCACCGACAACTACGATGATGATAGAATCATAGGCAAAGGAGGACATGGAACGGTGTACAAAGGTATATTATCAAATGGCAGTGTTGTTGCCATCAAGAAGGCCATGGTTTGCAACCAAACCGAGATTGGCCAATTCATCAACGAAGTGGTCGTGCTTTCCCAAATCAACCATAGGAATGTTGTCAAACTACTAGGTTGCTGTCTGGAGACTGAGTTTCCTTTGCTTGTTTATGAGTTCATCACCAACGGTACCCTCTGTGAGCATCTACATTTTGAAGGTGAGGCATGTGGTGATAAACACAAACTTTCATGGACAACACGTTTGAGAATTGCAGCAGAGACAGCAGAATCTCTTGCATACTTGCATTCTTCTGTTTCCACACCCATCACACATAGAGATGTTAAAACAGCAAATATTCTTCTAGATGACAACCTCACAGCCAAAGTTTCTGACTTTGGTGCTTCAAAGCTTGTTCCTCTTGATCAAACTCAGTTAACAACGTTGGTGCAAGGAACCATGGGTTACCTTGACCCTGAGTACTTCCAAACAAGCCAACTAACCGAGAAGAGTGATGTTTACAGCTTTGGTGTTGTTCTTGCAGAACTATTGACAAGTAAGAAGGCACTTTCGTTCTTTAGGCCTCAGAGTCATAGGAATTTGTCCATGTATTTTGTTTCTGCAATGAATGAGGGTCGGTTGGATCAAATATTGGACAAGGAAATCGTGAGTGATGCAAGTGTTGAGTATGTGATAGAAGTTGCTAATCTAGCCAAAAGGTGTCTTAGGTTGCATGGAGAAGAAAGACCAAGCATGAAAGAAGTTGCTATGGAGTTGGAGGGAATAAGGATCATTGAAAAACATTCACTGGGAGGAGCAAAAGATGTTGCATCTCAGGAAGAAACAGAGAGCTTTCTCAAACCACGTTCTCATTTTAGTATTGATCACGGTGATGGTACTGGTAGCAGTACAATTTCTAGGTTCTATGATTTGCATAACCAGATTTTGGAACCACTTGAAGATGGACGATGA 2280 0.4325 MAMNKILKLIQLILLIAVASKAVSQPSPDCPKSCGNLSIPYPFGTREGCYMNDTFLVTCNHDNSSTSIPLLGTNNILVLNISLEDGEVIVSSPVVRDCYGTKSKNSNDQNGLNLTHFSISPSRNKFTAVGCGTVGVFIGYDSSRKHVTTRGCVSMCDTLGEIRNGSCDGIGCCQIGVPDGVYGFAMKSWSISNNSTVRDGDFNPCNYAFTVAEGYYKFDTTNLKSLENPRLPLVLDWAVGNQTCEEAQQHPSSYACKDKNSYCLDSTNGIGYRCKCNHGGNPYLYDGCHDKDECALNSNPCVHKKSCKNAPGEGLKCSCPKGHEGDGLRNGQGCRPKRDKNTGNLILIIGLSLSLSLLAVVVGCLNIYPQFRERKLMKIRENYFKKNGGMLLQRQIDLVNGSTERATIFTAEELKKATDNYDDDRIIGKGGHGTVYKGILSNGSVVAIKKAMVCNQTEIGQFINEVVVLSQINHRNVVKLLGCCLETEFPLLVYEFITNGTLCEHLHFEGEACGDKHKLSWTTRLRIAAETAESLAYLHSSVSTPITHRDVKTANILLDDNLTAKVSDFGASKLVPLDQTQLTTLVQGTMGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTSKKALSFFRPQSHRNLSMYFVSAMNEGRLDQILDKEIVSDASVEYVIEVANLAKRCLRLHGEERPSMKEVAMELEGIRIIEKHSLGGAKDVASQEETESFLKPRSHFSIDHGDGTGSSTISRFYDLHNQILEPLEDGR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01009 759 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 709 IPR045274 GO:0007166
Vian3g01009 759 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524
Vian3g01009 759 Gene3D Transferase(Phosphotransferase) domain 1 497 717 - -
Vian3g01009 759 CDD STKc_IRAK 427 698 - -
Vian3g01009 759 Gene3D Phosphorylase Kinase; domain 1 388 496 - -
Vian3g01009 759 SMART serkin_6 421 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01009 759 Gene3D Laminin 290 329 - -
Vian3g01009 759 Pfam Protein kinase domain 421 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01009 759 CDD EGF_CA 290 326 - -
Vian3g01009 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Vian3g01009 759 SUPERFAMILY Protein kinase-like (PK-like) 405 696 IPR011009 -
Vian3g01009 759 Pfam Wall-associated receptor kinase galacturonan-binding 30 90 IPR025287 GO:0030247
Vian3g01009 759 ProSiteProfiles Protein kinase domain profile. 421 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01009 759 ProSiteProfiles EGF-like domain profile. 290 326 IPR000742 -
Vian3g01009 759 FunFam Wall-associated receptor kinase 2 391 496 - -
Vian3g01009 759 FunFam Wall-associated receptor kinase 2 497 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01009 Vian-Chr3 11047380 11050949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01009 7 700 Receptor kinase-like Gene Family AT1G21230 45.519 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vian3g01009 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01009 - - vun:114190859 1364.75