Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00998 ATGGCAGGGAACTTCAGATTCACAATGGATCAAAAGGACATTGTTAGATTATTGACTACAACTATAGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAGCAAAGAGCCCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGAAGGAAGTTGTGATAAGGACAGTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACATATAACATGGAAACTAAGCTTGCTAGGCTAGATTATGCAGAGAAGATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTACTACCTCTCAGCTTGGGCACATCTAAATCTATCTTATTTATGGAAGTTGAGGAACAGCATTCAAAATTGTATTCTCCATGCTCTTGAGATGTTCATTGTTGACCCCTTTTTTTCACGGATTGATTTTGCTCCTGAACTCTGGACGAACCTGTTTCTTCCACACATGAGCTCAATTGTGGGTTGGTATTCTGAGGAGAGGCATAGGCTTATGATGGAAGTGATACCAGACTCAAGTGATTTGTCCTTTACAGCTGATTTTGATCGGTTTTTCAACGAGTCTTTGGTATTTTCTATGAGGCCACATCAGTTAGACAAATTGCAAAAGCTGGAGCAGCTTTATGCAGAATCATTGGATGAAAACACACGGCTATACGCAAAATATTATAAAGATTGCATGAATTCTGATTCCACTTCAGGCAAGAAGGCAGCTCCTATGTTGCCTATTGCTGAGCCACCAAGGACTCCTTTGCATGAGTTGAGTCGGTCTGTTCCTGATTTTGTAAAATTTGGCCCTATCTTGCCCAAGAGTGCGGGCTTCTCTTTGACAACAAGATCAAAAGATGGTGTAAATGAAACAATCAGCACAGAGAATTCAACTTCCAGCCAATCAAAGGTTGAGAAATCATCCATATGGGCTGCTAAGGAAAGTATCATTGAGGAGAATGAGAATGAAGATGATTCAGATTCTGAGCTTGATGATGGTTCAGTGGATTCAGATAGAAGAAACAATATTTTATCACCAGGACTGAAGATGGCCAAGGATGAGGATATTGAACTAAAGGCGCCTCTATCAAACCATAAGAATAAGATTCATTCTCCTGATATCTTCTCTCCCTTGGATTCCCCAAAAGCAGGTTCAAATAATTCGTCAACAATTCCTGATACAAACAATAAGAGAGAACCCAAGTATCTTCGGTTACTGTCTACTCGTTTGAGGGACTCAACTATTTCTGACTCTTTATCATCATCATCTCTAGAAATGAGCACGGATCATATGTTGAACTCTGACACAGAAATAAGGGGCTTGAAGAATATGAAGAGGAAAAACAATAACCAAACACCAAGTATGAATCATGACAGTGGGAATAGCCTAGGACTAAATGACAGTTCCCTTTGTGAAAGTGACGAGGAAAATCAAAGCTTAACTATGTTGCCTAAGTTAGAGAAGCTGACAATTGGACCAAAACCACCAAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTGACCCTTGAAACAGGCCAGACTTATGAAAGAAAAGCAATTCAAGAATGGCTCAGAACAGGTAACACGACATGCCCCATCACGCGACAGCCTCTGTCTGCAAATATATTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACGTCATGGAAAGAACAGAATCCAGAGCTGGCGCATGAACTCTCGAATTCTAACACTCCAAGGGGTTCTTCCTGTTCTCCATCTGCAAAAGACTTTCAAATGCTCTCCATTACACATAGAGCAACTGATTCACCAGGTCTGAAGAGCAAAGAAAATTATACTAGACAAAGAAGCAACAGATTTATGCGAGTTTCTGTTGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGTAGTTGAAACAATTTTGAATTCCTTGAAACCTTACGTTTCAAGTCTTTCTACGTCAGAAAACTTGGAAGAATGTGAAGAAGCAGTGATGGAAATAGCAAGATTATGGAAAGATTCAAAGACAGATCCTCAGATTCATGGTTATTTATCAAAGCCAGAAATCATAAGTGGTTTGGTTGAAATTCTTTCAGCTTCTATGAGTAGAGTAGTTTTGAGAACATCAATTTGTATACTCTCTGAGTTGATATTTTTAGATGAAAGTGTTGGAGAAACACTTAACAGTGTTGATTCTGATTTTGATTGCTTGGCTGCTCTGCTTAAGAACGGTTTAGCTGAGGCTGTTCTTCTTATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTTGGCACATGAGCTTGTACCATCTCTTGTGCAAGTTATTCAGAACGAAAATGAGGCTTCAGATGATTTTCAGTTAGTAATAGACCCCAAAGATGCTGCCATAGCAATTCTTGAGCAGATTTTAATAGGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCTGAAAATGGAATTCCATCCTTAGCAAAGTATCTAGAGAGGATGGAGGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAGGGTTGCAAGAGTTTGATAGCCAACAGAATTGAATTGTCTCCTGTGCTTGAATTATTTCACGCTGGAAATGATAGTGTGCGAGGCATATGCGTGGAGTTTCTCTCCGAACTGGTTCAATTGAATAGAAGGACAGTCTGCAACCAGATATTACAAGCAATCAAGGATGAAGGAGCATTTAGTACGATGCATACGTTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCTAGTCTTCTTCTTCAGATTGATCTTCTGGTTGAGCCACGGAAAATGAGCATTTACAGGGAAGAAGCGATAGAGATACTTATAGAAGCACTTTGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTCTAGATGCTTTACTGTTTCTTATTGGACAAGTAACCACCACTGGAAAGTCATACACTGAAGCTTGGTTGCTCAAGATTGCAGGATTTGATCAACCTTACAATGCTTTACTTAAGGCTGGGCAGTTGGGACAGTATGACAATGATTCAATGGAAACAATGGAGGATGAAAAAAATGCTATGAACTCTTGGCAGAAAAGGGTAGCTTTTGTGCTTTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCTTTAAAGATGGCAAAATCTTGCCTTGTTCTTGTGGCATGGCTCACACACATGCTCTCTACTCTTCCTGATACCGGCATAAAGGATGTTGCTCGCAAATCTTTGCTTGATGAACTTATAAATATCCTGCAATCATCTAAGAACCTAGAGGAGATGATATTGGCTAGCCTAGCCCTGAAAACTTTCCTTAGTGATCCAATTACTCAAGAAGCACTTAGAGCTTATGCTAAGAGAATCTATAGAACCATGAGGAAGCTGAAGAAATATTCAACAGTAGCAGTTGATATTATGAAGGCCTTACTAAACTTAAACTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAGGAAGTTGTTGAGTTAGATTTGAGTTCAAATGGAGAGGTCCTTTCTTTGCATTACATGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGAAAGAGAATACCAAGAGTGATTCAAGAAACCCGTGAGCACACAAAAGCTGTAACATCGCTATGTTCTTCAGATGATAGACTATTCAGCGGTTCCTTAGACAAAACCATTCGGCTTAGTTATAGTATCGAATATGCACCACTGAATGATGCTGCTGATGTACAGGTTTGGACAATCAAACCAGATGAGATTAAATGTATAGATGTTCATGATGTAAAGGAGCCGGTGTATGAGCTGACAGCCAATGCCAAATTGGCATGCTATGTTTTCAAGTGGTCAGAGGCTCCAAAGCTCATGAATTTCAACAAATATGTGAAATGCCTAGCTGTTGCTGGGGACAAACTGTATTGTGGCTGCTCTGGTTACAGCATCCAGGAGGTTGACTTATCCAAGAATACATCAAACTCATTCTTCTCTGGAACAAGAAAGTTGTTGGGAAAACAAACCATATACTCCCTTCGAGTTCATGATGATCTCCTCTTTGCTTGTGGTTCTTCAGTTGATGCAACTGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGGTCACTCTCAACTGGACTTGACATCCATCGCATAGCCATTAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTGAAAGATAAGCTCACCCGGGTTGCTTCAATCAAAATGGCTGGTGGTCACACAAAGATCACATCTTTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCTTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4500 0.4 MAGNFRFTMDQKDIVRLLTTTIDSFIQDRLINKEQRAQHKEQCAERLAAEEGSCDKDSEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNYYLSAWAHLNLSYLWKLRNSIQNCILHALEMFIVDPFFSRIDFAPELWTNLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDRFFNESLVFSMRPHQLDKLQKLEQLYAESLDENTRLYAKYYKDCMNSDSTSGKKAAPMLPIAEPPRTPLHELSRSVPDFVKFGPILPKSAGFSLTTRSKDGVNETISTENSTSSQSKVEKSSIWAAKESIIEENENEDDSDSELDDGSVDSDRRNNILSPGLKMAKDEDIELKAPLSNHKNKIHSPDIFSPLDSPKAGSNNSSTIPDTNNKREPKYLRLLSTRLRDSTISDSLSSSSLEMSTDHMLNSDTEIRGLKNMKRKNNNQTPSMNHDSGNSLGLNDSSLCESDEENQSLTMLPKLEKLTIGPKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANILPKTNYVLKRLITSWKEQNPELAHELSNSNTPRGSSCSPSAKDFQMLSITHRATDSPGLKSKENYTRQRSNRFMRVSVATSPTSVLSQAVVETILNSLKPYVSSLSTSENLEECEEAVMEIARLWKDSKTDPQIHGYLSKPEIISGLVEILSASMSRVVLRTSICILSELIFLDESVGETLNSVDSDFDCLAALLKNGLAEAVLLIYQLRPVFAQLLAHELVPSLVQVIQNENEASDDFQLVIDPKDAAIAILEQILIGGDEYSRSLNALSVISENGIPSLAKYLERMEGRRSVVSILLCCMQAEKGCKSLIANRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTVCNQILQAIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPRKMSIYREEAIEILIEALWQKDFSNTQMKALDALLFLIGQVTTTGKSYTEAWLLKIAGFDQPYNALLKAGQLGQYDNDSMETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLVAWLTHMLSTLPDTGIKDVARKSLLDELINILQSSKNLEEMILASLALKTFLSDPITQEALRAYAKRIYRTMRKLKKYSTVAVDIMKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYMNGQVLSGHSDGTIKVWDARKRIPRVIQETREHTKAVTSLCSSDDRLFSGSLDKTIRLSYSIEYAPLNDAADVQVWTIKPDEIKCIDVHDVKEPVYELTANAKLACYVFKWSEAPKLMNFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKNTSNSFFSGTRKLLGKQTIYSLRVHDDLLFACGSSVDATAGKIFSLSSKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKLTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00998 1499 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1465 1499 - -
Vian3g00998 1499 Gene3D - 1186 1499 IPR015943 GO:0005515
Vian3g00998 1499 SUPERFAMILY WD40 repeat-like 1217 1498 IPR036322 GO:0005515
Vian3g00998 1499 MobiDBLite consensus disorder prediction 400 416 - -
Vian3g00998 1499 Pfam WD domain, G-beta repeat 1467 1496 IPR001680 GO:0005515
Vian3g00998 1499 Pfam WD domain, G-beta repeat 1219 1237 IPR001680 GO:0005515
Vian3g00998 1499 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Vian3g00998 1499 MobiDBLite consensus disorder prediction 254 276 - -
Vian3g00998 1499 SUPERFAMILY ARM repeat 665 1008 IPR016024 -
Vian3g00998 1499 SMART WD40_4 1456 1497 IPR001680 GO:0005515
Vian3g00998 1499 SMART WD40_4 1242 1279 IPR001680 GO:0005515
Vian3g00998 1499 SMART WD40_4 1199 1237 IPR001680 GO:0005515
Vian3g00998 1499 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Vian3g00998 1499 ProSiteProfiles Trp-Asp (WD) repeats profile. 1224 1237 IPR001680 GO:0005515
Vian3g00998 1499 MobiDBLite consensus disorder prediction 337 417 - -
Vian3g00998 1499 MobiDBLite consensus disorder prediction 338 352 - -
Vian3g00998 1499 MobiDBLite consensus disorder prediction 466 497 - -
Vian3g00998 1499 ProSiteProfiles Trp-Asp (WD) repeats profile. 1465 1499 IPR001680 GO:0005515
Vian3g00998 1499 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1498 - -
Vian3g00998 1499 MobiDBLite consensus disorder prediction 370 386 - -
Vian3g00998 1499 CDD RING-Ubox_PUB 516 568 IPR045210 -
Vian3g00998 1499 Coils Coil 225 245 - -
Vian3g00998 1499 Gene3D - 631 1015 IPR011989 -
Vian3g00998 1499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 597 IPR013083 -
Vian3g00998 1499 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Vian3g00998 1499 SUPERFAMILY RING/U-box 514 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00998 Vian-Chr3 10930944 10937593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00998 515 586 U-box Gene Family AT2G28830 47.222 1.75e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00998 - - gmx:100776142 2541.92