Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00990 ATGGGGTGTCTCTTGCTTCTTCTATGTTTTTCTACCTTTTTATATGCTGTTTCTGCCTTAAACTCTGATGGGTTGGCTTTGTTGTCCCTCTCCCGGGACTGGATTGTTGGGTCTGGTGACATAAACTCCACATGGAAGTTGTCAGATTCCACTCCATGCTCGTGGGCGGGAGTGCATTGTGATCGTGCCGATAATGTGAATTCTCTAAACCTCAGTAGATATTCTATTTTTGGCCAATTAGGATCTGAAATTGGACGTTTGATTCACTTGCAGTCCATAGACTTATCATATAATGATATGTTTGGAAATATTCCCCCAGAATTAAACAACTGTACCATGCTTGAGTACATGGACCTTACTGTAAACAACTTTAGTGGAGGAATACCAGAAAGCTTTAGAAACTTGCAAGATTTGAAGTATTTGGATCTCTCGATTAATCTGCTGAGTGGTGAAATTCCTAAATTCTTGTGGGAATATCCTCTCCTGGAAGAAGTGTATCTCAGTCACAACAGTTTAACCGGTTCCATTCCCTCAAGTATTGGGAATATGACCAACCTTGTCACCCTGGATCTTTCTTATAATCCGCTTTCAGGGAGTATTCCCGTGTCCATTGGAAATTGTAGTAAATTAGAGAATCTGTATTTGTTAGGTAATGGATTGCAGGGAGTTATTCCGGAGAGTCTAAATGATCTCGAAAATCTTCTTGTGTTATTTCTAGATCGTAATAGTCTTGGAGGTACTATTCAACTGGGATCTAGAAATTGTAAAATGTTGTCTATTCTGTCTCTTTCTCACAATAACTTCAGTGGGGGTATACCATCAAGCTTGGGGAATTGTACTGGCCTAATAGAGTTTTATGCTACAGCCAGTAACTTAGTTGGCAGTATACCGTCAACCTTAGGACTCCTTACCAACCTTTCTGTTCTAGTGATTCCAGAGAACAGTTTGTCAGGGAAAATACCTCCACAGATTGGTAATTGCAAATCACTGGATATGTTGTATTTGAATTCCAATGAACTCGAAGGAGAAATTCCAAATGAATTAGGAAACTTGAGTATATTACGCGAACTTATGTTGTTTGACAACCATTTGACAGGAAAAATTCCACTTGGCATTTGGAAAATTCAAACACTTGAGCAGGTACACGTATACATTAACAACCTTTCAGGTGAGTTACCTCTTGAGATGGCAGAGCTTAAACATCTTAAGAATATCTCCTTCTTTGAAAATCAGTTCTCTGGAGTCATTCCTCAAAGCTTAGGGATCAATAGCAGTTTGGTTCTGTTAGACGTCACGGATAATAATTTCACCGGTCCCATCCCACCAAATGTTTGCTTTGGAAAGCAATTGGTCAGGTTGAATATGGCTAACAATAAATTTTATGGCAGCATACCACCTGATCTTGGAAGATGCACAACTCTTGAAAGGCTCAGACTTGAAGGAAACAATTTCTCTGGGGCACTTCCAGATTTTGGAACTAATCCAAATCTCCTTCATATGAACATCAACAACAACAATATCAGTGGGGAAATTCCATCAAGTTTTGGAAACTTCACAAATATCTCTCTTTTAGATTTATCCGTGAACAGCTTGACAGGTCTTGTACCCTCGGAGCTGGGAAACCTTGTGAATCTCCGGACTTTGGTTCTTTCTCACAATACTTTGAAAGGCCCTTTGCCACATCAACTGTCAAACTGTAACAAAATGATCAAGTTTGATGTTGGATTCAATTTCTTGAATGGTTCGTTTCCATCAAATTTTCGGAATTGGACTGAATTAAATACTTTAATTCTCTCGGAGAATAATTTTGATGGTGGTATTCCAGCATTCTTGTCAGAATTTCAAAGGCTCAATGATTTACAACTTGGAGGAAACATGTTTGGAGGGAGCATTCCTAGATCAATTGGAGAACTGGTGGATTTGATGTATGTTCTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCTAGGGAGATCGAGAACCTGAAGAATCTGATAAAACTGGATCTATCTTGGAACAATTTGACAGGAAGTATACAAGTTCTCGATGAGCTCAGTTCATTATCTGAGTTCAACATTTCATATAATTCTTTTGAAGGTCGTGTTCCACTACGGCTAACAAATTTTATAAATTCCTCTCTATCGTTTTTCGGCAATCCTGGCCTATGTATCTCAAATTTCCCTGAAAACAGCTATTTGAGGCCATGTGATACAAATTCAGAAAAGTCAGAAAGGCTCAGTAAAGTTGCAGTTGCATTGATAGCACTTGGATCCTCAATATCTGTTATTCTGTTGCTGGTGTTGATTTATATATTCATTATCAGAAAAATTAAGCAGGAAGCCACAAACAATGAAGAAGATAGTTCTCCGACCCTTCTCAATATGGTTATGGAAGCTACAGAAAATCTAAATGATCAGTATATTATTGGCAGAGGAGCTCAAGGAGTTGTCTATAAAGCAGCACTTGGTCCAGAGAATATTTTGGCTATAAAGAAGTTTGTATTTGCCAGTGATGAAGCGAAAAGCTCAAGCATGACCAGAGAAATTCAAACCCTTGGAAATATTAGGCATCGAAATTTGGCCAAAATGGAGGGCTGCTGGTTGAGAGAAAACTATGGTCTAATTGCATACAAATACATGCCAAATGGAAAAAATGCTTATACAACAACAATGGGTAAAGAGTCCGATGTATACAGTTATGGTGTAGTATTGCTGGAGCTGATATCAAGAAAGAAGGCATTGGATCCATCATTTGTAGAAGGAACAGATATAGTTACTTGGGCTAGATCTGCCTGGGAGGAAGCAGGAGATGTGAATGAAATTGTTGATCGAGAGTTGGGTGGTGAAATTTCAAATTCTGAAGTGATGAAACAAGTTACAAAGGTGCTTTTAGTGGCTTTGAGATGTACATTAAAGGATCCACGCAGCAGACCAACGATGAGGGATGTTATCAAGCATTTGTATGCAGATGTTAAAAACTCCACATAG 2991 0.3875 MGCLLLLLCFSTFLYAVSALNSDGLALLSLSRDWIVGSGDINSTWKLSDSTPCSWAGVHCDRADNVNSLNLSRYSIFGQLGSEIGRLIHLQSIDLSYNDMFGNIPPELNNCTMLEYMDLTVNNFSGGIPESFRNLQDLKYLDLSINLLSGEIPKFLWEYPLLEEVYLSHNSLTGSIPSSIGNMTNLVTLDLSYNPLSGSIPVSIGNCSKLENLYLLGNGLQGVIPESLNDLENLLVLFLDRNSLGGTIQLGSRNCKMLSILSLSHNNFSGGIPSSLGNCTGLIEFYATASNLVGSIPSTLGLLTNLSVLVIPENSLSGKIPPQIGNCKSLDMLYLNSNELEGEIPNELGNLSILRELMLFDNHLTGKIPLGIWKIQTLEQVHVYINNLSGELPLEMAELKHLKNISFFENQFSGVIPQSLGINSSLVLLDVTDNNFTGPIPPNVCFGKQLVRLNMANNKFYGSIPPDLGRCTTLERLRLEGNNFSGALPDFGTNPNLLHMNINNNNISGEIPSSFGNFTNISLLDLSVNSLTGLVPSELGNLVNLRTLVLSHNTLKGPLPHQLSNCNKMIKFDVGFNFLNGSFPSNFRNWTELNTLILSENNFDGGIPAFLSEFQRLNDLQLGGNMFGGSIPRSIGELVDLMYVLNLSANGLIGELPREIENLKNLIKLDLSWNNLTGSIQVLDELSSLSEFNISYNSFEGRVPLRLTNFINSSLSFFGNPGLCISNFPENSYLRPCDTNSEKSERLSKVAVALIALGSSISVILLLVLIYIFIIRKIKQEATNNEEDSSPTLLNMVMEATENLNDQYIIGRGAQGVVYKAALGPENILAIKKFVFASDEAKSSSMTREIQTLGNIRHRNLAKMEGCWLRENYGLIAYKYMPNGKNAYTTTMGKESDVYSYGVVLLELISRKKALDPSFVEGTDIVTWARSAWEEAGDVNEIVDRELGGEISNSEVMKQVTKVLLVALRCTLKDPRSRPTMRDVIKHLYADVKNST 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00990 996 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Vian3g00990 996 Gene3D Transferase(Phosphotransferase) domain 1 886 996 - -
Vian3g00990 996 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 771 880 - -
Vian3g00990 996 Pfam Leucine rich repeat 495 555 IPR001611 GO:0005515
Vian3g00990 996 Pfam Leucine rich repeat 161 220 IPR001611 GO:0005515
Vian3g00990 996 Gene3D Ribonuclease Inhibitor 492 746 IPR032675 -
Vian3g00990 996 Gene3D Ribonuclease Inhibitor 254 423 IPR032675 -
Vian3g00990 996 SMART LRR_typ_2 542 566 IPR003591 -
Vian3g00990 996 SMART LRR_typ_2 87 111 IPR003591 -
Vian3g00990 996 SMART LRR_typ_2 663 690 IPR003591 -
Vian3g00990 996 SMART LRR_typ_2 231 255 IPR003591 -
Vian3g00990 996 SMART LRR_typ_2 135 159 IPR003591 -
Vian3g00990 996 SMART LRR_typ_2 518 541 IPR003591 -
Vian3g00990 996 SMART LRR_typ_2 183 207 IPR003591 -
Vian3g00990 996 PANTHER UNNAMED PRODUCT 6 99 - -
Vian3g00990 996 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Vian3g00990 996 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 179 308 - -
Vian3g00990 996 FunFam Leucine-rich receptor-like protein kinase family protein 320 418 - -
Vian3g00990 996 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 19 178 - -
Vian3g00990 996 SUPERFAMILY RNI-like 176 588 - -
Vian3g00990 996 Gene3D Ribonuclease Inhibitor 180 253 IPR032675 -
Vian3g00990 996 Gene3D Ribonuclease Inhibitor 424 491 IPR032675 -
Vian3g00990 996 Gene3D Phosphorylase Kinase; domain 1 773 880 - -
Vian3g00990 996 Gene3D Ribonuclease Inhibitor 20 179 IPR032675 -
Vian3g00990 996 ProSiteProfiles Protein kinase domain profile. 804 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00990 996 SUPERFAMILY Protein kinase-like (PK-like) 790 989 IPR011009 -
Vian3g00990 996 Pfam Protein kinase domain 808 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00990 996 SUPERFAMILY L domain-like 560 738 - -
Vian3g00990 996 SUPERFAMILY L domain-like 25 285 - -
Vian3g00990 996 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 448 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00990 Vian-Chr3 10882482 10885856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00990 885 994 Receptor kinase-like Gene Family AT1G73080 52.174 3.40e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian3g00990 Pkinase 7.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00990 - - gmx:100817655 1319.29