Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00982 ATGTTTTCTAGGTTGATACATCCCCATGAAGGGGGTGTTGGGCAGGAAGACATGCAGGGTGCTTCCAATCACGCTCACCTCGGAGACCCTTGTCTTGTTCTCACCTCTGATCCCAAACCTCGTCTTCGGTGGACCGCTGACCTTCACGAACGCTTTGTTGACGCTGTCACTCAACTTGGGGGTGCCAGTAAAGCCACTCCTAAAGCGATCATGAGAACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAAAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGTTGCAAAGATGGGATGTCAGGTTCGTATCTTCAAGAAAGCCCTGGTACTGACAACTCATCTCCAAAGTTACCAACTTCGGATGCAAACGAGGGTCATGAAGTGAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGCTGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGGAGGTACATGGGCATGCTCGAGCGAGCATGTAAGATGTTAGCCGATCAATTTATTGGGGACATAATTATGGACACAGATGGCCAAAAATTTCAAGGGCTGGAAAGTAAAACACCCAGAAGTTCCCTAGTTGATCACGTTGGGTTTTTCCCCCCAGTATGTTCTGAGGTAGGTGGAATGCATGTTTCAGAAGTACCACCTATTCTCCAGCCTCAAGGGGCTGACTGTTCCACTGAAAGTTGTCTGACATCACTTGAGAGTTTAGGAGGGTTGACGCTCGAAGGATCTCCCGGCGGATCGAAGAAGAGGATGCTGAGCTTGGATTCAATGGTAGCACCTTTGATCTGGAGTGAAGCCAACACCAGAACTCAAGGAATCCATTTAGCTCAAGTCAATCCTCCAGGAATAACTAGGTATGGTATGTAG 933 0.4727 MFSRLIHPHEGGVGQEDMQGASNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGMSGSYLQESPGTDNSSPKLPTSDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMGMLERACKMLADQFIGDIIMDTDGQKFQGLESKTPRSSLVDHVGFFPPVCSEVGGMHVSEVPPILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMLSLDSMVAPLIWSEANTRTQGIHLAQVNPPGITRYGM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00982 310 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Vian3g00982 310 MobiDBLite consensus disorder prediction 113 130 - -
Vian3g00982 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 39 94 IPR006447 GO:0003677
Vian3g00982 310 Gene3D - 38 96 - -
Vian3g00982 310 FunFam Myb family transcription factor 38 96 - -
Vian3g00982 310 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Vian3g00982 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 208 IPR044848 GO:0003700
Vian3g00982 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 96 IPR017930 -
Vian3g00982 310 MobiDBLite consensus disorder prediction 93 133 - -
Vian3g00982 310 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Vian3g00982 310 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00982 Vian-Chr3 10806390 10809234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00982 8 254 G2-like Transcription Factor Family AT3G24120 45.946 2.74e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian3g00982 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00982 - - vum:124825518 593.578