Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00978 ATGGAAGCACCAGAGGAACTCTCTCTGGGGGGGTCCAAAGATCACGCCAACATTGTCAAGGGGAAAAGAACCAAAAGGGTCAGACCACAATCCCCTATCCCCTTCTCTGTCACCGCCAATTCCTCCACCGGAGAAGGAGAAAGAGAAGATTGCTGCAATGTTGATGACAACACCAACACCAACACCAACAAAAATTATGATATTAATAATAACAACATCATCGTCAACAACATCAACAACAACAACAACTCTCCCACCACTTCCTCTGCAGGATTACAAGACAGCACGGATGAAGAGGAGGACATGGCCAATTGCCTCATCCTTCTGGCACAAGGACAATCTCGGGAATCTCCAAAACATGTCGAGGAAGATGTGGGAATGAACTACGCCAAGTACAGCAGTAGGAAATTCTTGGAGGCGGCCACCTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGTAACAGAACTTTCCCTTCTTTTCAAGCACTCGGAGGCCACAGGGCCAGTCACAAGAAGCTTAAGGCAATCGTGCCCATTCCCCAAGAGAAGAAGCACCAACACCTTTTGTCATCGGATGAGGACGACTTTCAATTGAAGCCCAACAATAAATCACCATTTTCCCTTCAACTCGGTACAAAGGCCAGTTTGTACAACAAATCCAAGGTGCACGAGTGCTCCATCTGTGGTGCTGAATTCACATCGGGGCAAGCACTGGGAGGCCACATGAGACGCCACCGCGCACCGGTTGGGATCCCCACCACACTCTCCTTCACCCCATTGACTCTGGAACCGGAAGAAGATCACCCCAGAAAGAAAAGGAATGTCTTGAACTTGGAATTGGATCTCAATCTTCCCGCCCCAGAAGATGATCAAAGAGAATCCAAGTTTTCCTTTGCATCCAAGCAACAACAACAACAACAACATGGACAGAAAAAACAGCAGCAGCAGCAGCAGCAACAACAACAACCACAAACAAGTCTTGTCTTAACTGCCCCAGCTTTGGTGGATTGTCATTACTGA 1035 0.4783 MEAPEELSLGGSKDHANIVKGKRTKRVRPQSPIPFSVTANSSTGEGEREDCCNVDDNTNTNTNKNYDINNNNIIVNNINNNNNSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHVEEDVGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKLKAIVPIPQEKKHQHLLSSDEDDFQLKPNNKSPFSLQLGTKASLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLTLEPEEDHPRKKRNVLNLELDLNLPAPEDDQRESKFSFASKQQQQQQHGQKKQQQQQQQQQQPQTSLVLTAPALVDCHY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00978 344 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Vian3g00978 344 Coils Coil 306 326 - -
Vian3g00978 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Vian3g00978 344 MobiDBLite consensus disorder prediction 287 331 - -
Vian3g00978 344 MobiDBLite consensus disorder prediction 78 97 - -
Vian3g00978 344 SMART c2h2final6 153 175 IPR013087 -
Vian3g00978 344 SMART c2h2final6 228 250 IPR013087 -
Vian3g00978 344 Pfam C2H2-type zinc finger 152 177 - -
Vian3g00978 344 Pfam C2H2-type zinc finger 227 253 - -
Vian3g00978 344 MobiDBLite consensus disorder prediction 31 47 - -
Vian3g00978 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 250 IPR013087 -
Vian3g00978 344 MobiDBLite consensus disorder prediction 302 331 - -
Vian3g00978 344 MobiDBLite consensus disorder prediction 1 50 - -
Vian3g00978 344 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Vian3g00978 344 MobiDBLite consensus disorder prediction 78 93 - -
Vian3g00978 344 SUPERFAMILY beta-beta-alpha zinc fingers 152 250 IPR036236 -
Vian3g00978 344 Gene3D Classic Zinc Finger 151 250 - -
Vian3g00978 344 PANTHER ZINC FINGER PROTEIN ZAT5 86 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00978 Vian-Chr3 10775021 10776055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00978 1 344 C2H2 Transcription Factor Family AT5G04390 43.122 2.13e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g00978 zf-C2H2_6 6.8e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00978 - - gmx:100799383 489.189