Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00976 ATGGGTCGCGAAACTGTGTTCCTTCCAGCCCCACCAACCACTACCACCACTATAGTGAATCCAGTGGCAGCACCAGCTGCACCACCTACCTCTCTTGCTCCTGGTTTCAGGTTTCACCCAACTGACGAGGAGCTTGTTATCTATTACCTCAAGCGCAAGGTTTCTGGTAAAAGCTTCCGATTTGATGCTATATCTGAAGTGGACATATACAGGAGCGAGCCCTGGGACCTAGCTGATAAATCAAGGTTGAAGACAAGGGACCAGGAGTGGTATTTCTTTAGTGCATTGGACAAGAAGTATGGAAATGGTGGAAGGATGAACAGGGCTACCAACAAAGGGTATTGGAAAGCCACTGGGAATGATCGGCCAGTGAAGCATGATCAAAGGACTGTGGGGTTGAAGAAAACTTTGGTGTTTCACAGTGGGCGAGCTCCTGATGGGAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTGTTGATGAGGAGTTAGAGAGAGCTGGGACTGGATCCTCTCAGCCTCAGGATGCGTATGTTTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGATATGCACCCTTTGTTGAAGAAGAGTGGGATGATGCATCTGGAATGGTTCCAGGGGCAGAGCCTGTGCATAATGGCTCTATCGCCCACCAGCCACGTGTTGAAGGCAACAATGGTGTTTTATTTGCTGAAGGGAGAAATGGTGTTCTACAGGACACTCAATCCATCAATAAAACTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTTTGCAAGAGAGAAAGCATGGCTGAGTATCCATCTCCTGAAAAGGATGATAATAATTGTAAGCAAGTGGATGAGTACCCTTCACCCCAAACAGACAATCCAAAACCCTTCTCTCTAATATACAAACGAAGGCGGCATAACTTGAACTCCAACCACTCTAATGTTTCTGGAGATTCAATCCGAACTGGTCAGGATCCATGCTCCTCTACAATAACTACTGCAGCAACAACACTCCCAACCACCACTGCTGGTGCCGAAACCACCAACTCTGCACCAAAAAAGCATTTTCTGTCTGCACTGGTGGAATTTTCCCTGCAAGAGTCCCTTGAATCTAAGGAAAGTCTTGCTTTGATCAAGGCACCGGATTTTGATGCCGAAAACCTTGAGTCATCCATGTCTCCAAGCTCTGCCAAGTTCATCAAGAACTTGCAGAATGAGATCCATAAGCTTGCAGTCGAAAAGGAGACAATGAGGTTTGAGATGATGAGTGCTCAAGCGATGATTAACATTCTCCAGTCTCGTGTTGACGTTCTCAGCAAAGAAAATGAGGATTTGAAGAGAATGACCCAAAATCCTTAG 1389 0.4572 MGRETVFLPAPPTTTTTIVNPVAAPAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVKHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASGMVPGAEPVHNGSIAHQPRVEGNNGVLFAEGRNGVLQDTQSINKTPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKQVDEYPSPQTDNPKPFSLIYKRRRHNLNSNHSNVSGDSIRTGQDPCSSTITTAATTLPTTTAGAETTNSAPKKHFLSALVEFSLQESLESKESLALIKAPDFDAENLESSMSPSSAKFIKNLQNEIHKLAVEKETMRFEMMSAQAMINILQSRVDVLSKENEDLKRMTQNP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00976 462 MobiDBLite consensus disorder prediction 319 338 - -
Vian3g00976 462 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 31 324 - -
Vian3g00976 462 Gene3D NAC domain 41 189 IPR036093 GO:0003677|GO:0006355
Vian3g00976 462 MobiDBLite consensus disorder prediction 320 338 - -
Vian3g00976 462 MobiDBLite consensus disorder prediction 279 307 - -
Vian3g00976 462 FunFam Nac domain-containing protein 86 41 189 - -
Vian3g00976 462 SUPERFAMILY NAC domain 26 187 IPR036093 GO:0003677|GO:0006355
Vian3g00976 462 Coils Coil 438 458 - -
Vian3g00976 462 Pfam No apical meristem (NAM) protein 34 159 IPR003441 GO:0003677|GO:0006355
Vian3g00976 462 ProSiteProfiles NAC domain profile. 32 186 IPR003441 GO:0003677|GO:0006355
Vian3g00976 462 Coils Coil 410 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00976 Vian-Chr3 10730957 10740669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00976 1 457 NAC Transcription Factor Family AT3G10480 43.223 8.95e-117 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian3g00976 NAM 2.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00976 - - gmx:100808783 765.377