Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00975 ATGGCACCTATGGGTCCCGGCTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTGAAGCGCAAGATCACCGGAAACCTGTCCCGGTACGACCACATCGCAGTGGTTGATGTCTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTGTCGAAGCTCAAGACCAAGGACTTGGAATGGTACTTCTTTAGCGTGCTGGACCGCAAGTATGGAAATGGCTCCAGGACCAACCGCGCCACCGAGAAGGGCTACTGGAAGACCACGGGAAAGGACCGCCCTGTGGCCCATGGCGACCGCACCGTGGGGATGAAGAAGACCCTCGTGTACCACATCGGTCGAGCCCCACATGGCCGTCGCACCAATTGGGTCATGCACGAGTACAAGATGCTCGATGAAGAATTGACTCGTGCTGGCACAGTGCTGGATGTGTATGTGGTATGTAGGATTTTCGAGAAGAGTGGTGCTGGACCAAAGAATGGGGCCAAGTATGGTGCTCCCTTGGACGAGAAGGAGTGGGATGTGGATGAGGAGAATGAGCAGAAGGAGGTGGTTGCCTTGCCTGCGACTGCTCATCGTGTGGTGGTTCCCTTGACGGAGATTCGTCCTAACGTGGTTGCTCCTCCTTTGCCCGCGACAGCTGCCGTGGCTCCTCCTGTGGTAGCAACTGGTGGTGACTTTTGCGATGGTATTGGGGTGGCTCTTCCTTCGGTAGCAACTGGTGCTGATTTTTGGGATGATATTGGGGCCTTTTTGGAAACTAACGACCTTGACGGGGAACTTGATTTGAGTGATATGATTGGGGGTGTTACTTTTCCATCACTAAACTTTCATCACGGGGAGTGTAGTACCTACGCTGAAAATTCCCAAGAACTCATCAAGGATCAGGAGCCATTGGCGGACACCTTTGGAATTTCTGGGCCTGAAAATGGCCAGACTCTTGATATGGCTGAGCAACATGATATGGGCACAGGTTCAGTGAAAGATGAAGACATGGGTGAGCAGAGCGAAATTGTGAATCTTCTCAATTTCAATGATGCATCGGATAATATGGATCTGGATCTATATTTTGATGCCGCCCAGAATCTTCCAACGGCTGATGATGAATCATTCTTGGAAACCAATGATCTTGCAATTGGGAATGAGGATGATCTCATTGAGGCTGATCCTTCTGCGAATGATATTATGCTAGACAAGTATCTTCCACTCCCTGATGATGATGATGGTGATATTTGGAAATATATATCTTTCGATTATTCTCAGGTTGCAGAGAGTGAAAACTCTAATTCCAACCAAGGATCACCTTTAACCCAGCAGACTGTAGGGGGAGAAACAGCAAATAAAGCTGTGGTTGGTAAGCATGATTCTGAAGCACAAACTAGCAATGAGGCTTTTTTGGTGCAGAATACAGAGGAGGCAAAGTTAGCAGCACCAGGAAATACAAATCCATTTGTTAAGCAGGCCTATGGATGGTTAGCTAACATCCCTGCTTCACCTGCACATGCTTTTGAGTTTCCAGCAAAGGACATTACTCTTGGGATTGATGGTGCAGCTCAGTCTTCCCATCCAGCTCATATAACTACAGGTATGATCAGCATAACAGACATTACTTTTAGAGGCAATGCGATGGATTGGCCTATGGGCAAAATTGGAGGATTTAACACTGCAATGTCTACTGAGTTTTCTCAACCGGACGTTAATTGTGCTGCCTTGATACCTGTTTCTGGCAAGACCGCATTTGTATTGTCACATGGCTGGATATTTTTGACGGGTTTCTCAGTTCTTATTCTTTCACTTAGTTTCAAGATTGGAAGCATCATGTATACTGGTAAGTAA 1839 0.4807 MAPMGPGFRFHPTDEELVVFYLKRKITGNLSRYDHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSVLDRKYGNGSRTNRATEKGYWKTTGKDRPVAHGDRTVGMKKTLVYHIGRAPHGRRTNWVMHEYKMLDEELTRAGTVLDVYVVCRIFEKSGAGPKNGAKYGAPLDEKEWDVDEENEQKEVVALPATAHRVVVPLTEIRPNVVAPPLPATAAVAPPVVATGGDFCDGIGVALPSVATGADFWDDIGAFLETNDLDGELDLSDMIGGVTFPSLNFHHGECSTYAENSQELIKDQEPLADTFGISGPENGQTLDMAEQHDMGTGSVKDEDMGEQSEIVNLLNFNDASDNMDLDLYFDAAQNLPTADDESFLETNDLAIGNEDDLIEADPSANDIMLDKYLPLPDDDDGDIWKYISFDYSQVAESENSNSNQGSPLTQQTVGGETANKAVVGKHDSEAQTSNEAFLVQNTEEAKLAAPGNTNPFVKQAYGWLANIPASPAHAFEFPAKDITLGIDGAAQSSHPAHITTGMISITDITFRGNAMDWPMGKIGGFNTAMSTEFSQPDVNCAALIPVSGKTAFVLSHGWIFLTGFSVLILSLSFKIGSIMYTGK 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00975 612 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Vian3g00975 612 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
Vian3g00975 612 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Vian3g00975 612 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 183 - -
Vian3g00975 612 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Vian3g00975 612 FunFam Nac domain-containing protein 86 13 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00975 Vian-Chr3 10718030 10720965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00975 4 608 NAC Transcription Factor Family AT5G04410 35.691 4.79e-104 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian3g00975 NAM 6.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00975 - - vun:114191703 1095.49