Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00957 ATGACAGATTTTCAGCCGCTACAGCAGAAACCCGAGCCTGCTGATTCCCATTCCGAGTTTGAGAGGGGACTGGAGGAGTTTATGCGCGGGCACTTGGATGAGTGTATGTCGTTTGCTTCATGTAGCTCCTCCCGCGCACCTGATGATGAGGATGACGAGAGCGATCAGCTGGTTCGGAGGAGACGGAGGTCTGACCTTGAAGGGGATGATTTAGCAGAGTCGTCGGCTGCACGCCGGCGGCATTCAAGAATTTTGAGCAGATGGGCTGCACGGCAGGCACAGGAAATGATAACCACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCGGGTTTGCATACAGTCTCGATGTTGGATTCTTCTTTCCTGAGGGGTTCACAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCAAGCACTCAGGCGTCTGCCATTTTGCAGATGTGGCGTGAATTGGAAGATGAACATTTGTTGAATCGGGCACGGGAAAGGATGAGGGTAAGGTTGCGGCAGCAGAGGAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCAGATAGTCGAGGCAGTGAGAATCATGGGAGTTTGGGAGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGGTCGAGGAATGCACATGGGGATCATAACGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATAGTTCGGGGGTGGATGGAAAGCGGCATTAGTGATCATTCCTCCAATGTGAGTCAGCGAAACAATAACCGGAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTCAGGGAGTGGGTGCAAATGACTAGCCAGCAGAGAGGTTCGCGTGGGAGCCGTAGGGATTCTCAAGTAAGTGAAGGTGCTCAAGCTGATCCAGTCCGTGATGTAGCTGACAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGACATGTTGAGGTTGCGCGGAAGACAGGCTCTAGTTGATTTGCTAGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGATTGCTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTTAGAGGTAGATTCCTGCGAAATGAAAGAACTGTTGAAGACGAGAGGCCACCATCTATGGCCGCTAGTGAATTAGTTCAGCTAAGACAGCGGCACACAGTCTCTGGTTTAAGTTCTATTCCAATATGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTCCGTGGTCAAGCAGGCACAAATCCTGATACCATATCAAATAGTAATGCCACTGAAACAAGAGGGGATGAAAACCAAGCAAACAGTATGGTAGATGGCCAACAAGAAAATTATGAACAACAGCAGATTAGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATGGAACAGGAACTATGGAGACTAGCACAAGTGAGAGTATTAGTTGGCAAGAAACTGGTAACCAAGGAGGGAATTGGCAGGAACAAATTGCTGAGGAAGGGGGAGGAAATTGGCAACATAGTCCATTCAATCAGATGAGAGATGGAAGGGCAGTCAATGATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAAAATCCTCATCCGCGGGAAGCTCAAAGAATTTGGCATGAAGATAACAATAGGGAAACTGCTGGTAATTGGTCTGATGGACCTTCTGGAGTTTCGAGGAATCATCGTGGGGTTCCTGTTAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTACGCAGTGGTTTCCGCGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCGGAACTTGCCGACACCAACTCCTGCTTCACCTGAACGGGACCCAGATCAGCAGACTGGTGAACGTGCTGAGGGTCAGCATGAAACAATTAACAGACCTTCACTGGTGTTGCCATCTCCACCTGTGCCTCCGCCACAACCTCTGTGGCACCAGGATTTACATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGTATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCAGCTCTGAACCGCTCAGCCGGTGAAAACGGATTGGGTGCTGAGACATCTGATGATGGGTCTAGATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATAGATTCTCTTTTGTACAGATGCGGGCACATGTGTACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2562 0.4817 MTDFQPLQQKPEPADSHSEFERGLEEFMRGHLDECMSFASCSSSRAPDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRQQRNSDSNTNVSSTMSDSRGSENHGSLGDASESENDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVSEGAQADPVRDVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLSSIPIWEGFRSRLENIVRGQAGTNPDTISNSNATETRGDENQANSMVDGQQENYEQQQIRSLETDVRQLPNGTGTMETSTSESISWQETGNQGGNWQEQIAEEGGGNWQHSPFNQMRDGRAVNDWPQEPPRNLAGENPHPREAQRIWHEDNNRETAGNWSDGPSGVSRNHRGVPVRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQTGERAEGQHETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSRWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00957 853 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Vian3g00957 853 MobiDBLite consensus disorder prediction 296 335 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 40 78 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 654 694 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 222 244 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 125 146 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 1 24 - -
Vian3g00957 853 SUPERFAMILY RING/U-box 800 846 - -
Vian3g00957 853 CDD mRING-HC-C3HC5_NEU1 798 850 - -
Vian3g00957 853 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 853 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 321 335 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 177 221 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 489 591 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 562 576 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 439 464 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 173 244 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 52 78 - -
Vian3g00957 853 Pfam Zinc finger, C3HC4 type (RING finger) 798 845 - -
Vian3g00957 853 Coils Coil 730 750 - -
Vian3g00957 853 MobiDBLite consensus disorder prediction 296 313 - -
Vian3g00957 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 851 IPR013083 -
Vian3g00957 853 MobiDBLite consensus disorder prediction 489 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00957 Vian-Chr3 10512244 10517546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00957 801 847 C3H Transcription Factor Family AT3G06140 42.553 1.41e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00957 - - gmx:100805607 1512.66