LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g00951	ATGAACTGTCTTCACAATCTTTCTCGATTCTCTATTTTGCCCTTTGAAACTGTTGCCACGCGCCACCGCAACAATCTTCCCCTTTCGCTGAGAATCGTCAATAATTTTCATCGTAATCGAAGTATGGCGCTCAAGGCTGCTTCAGGTTCTGTACCAAGTGCAGACAAAAGTAATGTCAGCAAGGAAGAGGAAAAGTCTGAGACATACTCTCATAACATGACCGAAGCCATGGGTGTTGTTTTGACTTATAGGCACGAGTTAGGAATGAACTATAACTTCATCCGTCCAGACTTAATTGTGGGATCATGCCCACAGACTCCTGACGATGTTGAGAAGTTGCATAGAATTGGAGTGAAAACAATATTTTGTTTACAACAAAATCCAGACCTTGAATATTTTGGAGTTGATATTAAGGCCATACAAGAATATGCCAAGGCACATGATGTTCAACACTTGCGAGCTGAGATAAGGGACTTTGATGCATTTGATCTAAGGATGCGACTTCCAGCTGTAGTTAGCAAATTGTATAAGGCAATAAATTCCAACGGAGGCGTAACATATATTCATTGCACTGCTGGACTTGGAAGAGCTCCTGCCGTTGCAACGGCCTACATGTTTTGGGCTCTGGGTTATACATTCAAAGAGGCTCATACACTACTTCAGAGCAAAAGGGAGTGTTTTCCCAAACTAGATGCCATTAAAAGTGCAACGGCAGACATCCTTACAGGCCTTAGTAAGAAACCTGTCACTTTGACATGGGAAGACAGCAGTTGCTCTAGGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAGTACCCCTAAATTTTGATGACAAATCGGGTTTGTGGTATCTCGAGAGGGAATTACCTGAAGGACGCTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAAAGATGAGCTTGTAACTGCTCCCAACAAAGATGGTCATGTCAACAATTTCATTCAAGTCCTTGATAATAGCAGCAGTGGTCGTGTTTCCCTTCGGGAGAGATTCAGTTCTGATGATCCTGATCTTACACCGGAGGAACGACTGAGAATAAAGGAGTTTCTCGAAGCTTGTCCTGACGAGGATCTGTGA	1116	0.431	MNCLHNLSRFSILPFETVATRHRNNLPLSLRIVNNFHRNRSMALKAASGSVPSADKSNVSKEEEKSETYSHNMTEAMGVVLTYRHELGMNYNFIRPDLIVGSCPQTPDDVEKLHRIGVKTIFCLQQNPDLEYFGVDIKAIQEYAKAHDVQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVATAYMFWALGYTFKEAHTLLQSKRECFPKLDAIKSATADILTGLSKKPVTLTWEDSSCSRVEISGLDIGWGQRVPLNFDDKSGLWYLERELPEGRYEYKYIVDGEWTCNKDELVTAPNKDGHVNNFIQVLDNSSSGRVSLRERFSSDDPDLTPEERLRIKEFLEACPDEDL	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g00951	371	PANTHER	DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN	23	369	-	-
	Vian3g00951	371	Pfam	Dual specificity phosphatase, catalytic domain	142	227	IPR000340	GO:0008138\|GO:0016311
	Vian3g00951	371	CDD	E_set_AMPKbeta_like_N	248	329	-	-
	Vian3g00951	371	Pfam	Glycogen recognition site of AMP-activated protein kinase	248	332	IPR032640	-
	Vian3g00951	371	MobiDBLite	consensus disorder prediction	47	69	-	-
	Vian3g00951	371	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	83	263	-	-
	Vian3g00951	371	SUPERFAMILY	E set domains	247	330	IPR014756	-
	Vian3g00951	371	Gene3D	Protein tyrosine phosphatase superfamily	83	362	IPR029021	-
	Vian3g00951	371	Gene3D	Immunoglobulins	244	334	IPR013783	-
	Vian3g00951	371	SMART	dsp_5	90	239	IPR020422	GO:0006470\|GO:0008138
	Vian3g00951	371	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	166	224	IPR000387	GO:0016311\|GO:0016791
	Vian3g00951	371	CDD	DSP_laforin-like	89	235	IPR045204	GO:0019203
	Vian3g00951	371	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	90	246	IPR020422	GO:0006470\|GO:0008138
	Vian3g00951	371	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	87	230	IPR029021	-
	Vian3g00951	371	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	244	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g00951	Vian-Chr3	10422837	10430612	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g00951	89	371	Protein tyrosine phosphatase (PTP) family	AT3G52180	67.958	2.10e-148	419

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g00951	-		-	pvu:PHAVU_007G145000g	643.654