Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00949 ATGGGTCCAGAACAACAAGATGGTGGAAGAAACATTGTCAACTATGGAAATATTCGCATAAGATTCCGCGGCATTAATACCACGTTGTTACTGTGTGCCAGACCGAAGCCGTGCCTCGAGATGGGGAAGACTGAAGAGAACGATGCTCTTACAAAGAACAAACCTCCCACTGAAAAGGATATTTTGGCCGAGCTTGAGTTGAAAATGAAGAAGTATCTGAGAGGAGAAAGTGCTAATTTGGAGGTACAAGTCATTGAGATTGCTGGAATTGAGACACTGGTTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGCTGTTAAAGAGCAGTTATATGGAAAATCCGCACAAGCTGCTGCCAAGGCCGAGAAGTGGCTTATGCCTAGTGAAGGAGGTTATCTAGAGGCTGAAGGCTTGGAAAAGACATGGAGGATCAAACAGGAGACAATAGCTCATGAAGTAGATATCTCAAGCTCACGGAAGCAGTATGATATTATTTTACCAGAACTTGGTCCATACACACTGGATTTTACTTCAAGTGGCCGGTACATGGCTGTGGGTGGTCGAAAGGGCCATCTAGGAATAGTGGACATGATAAATTTGAGCCTAATTAGAGAGCTTCAGGTAAGGGAAACAGTGCGTGATGTGGTATTCTTGCACAATGAGCTCTTTTTCGCTGCTGCACAGAAAAAGTATCCATACATCTATAATCGAGAAGGCACTGAACTTCACTGCCTTAAGGAACATGGTCCGGTGTTGAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTGGCTACACTCAATAAGTTTGGGCAGCTTCGCTATCAGGATGTTACAATGGGTTCAATGGTTGGTAATTTTCGAACTGGCTTAGGACGTACAGATGTGATGCAAGTAAACCCCTTCAATGGAGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTCACCATGTGGAAGCCGACCAGCTCTGCTCCTCTTATCAAGATGCTATGTCATCAGGGGCCTGTTTCAGCGCTGGCATTTCACTCAAATGGCCACTTGATGGCCACTGCAGGAAAAGATAAAAAAGTCAAGCTTTGGGACTTAAGGAAATTTGAAGTTCTTCAAACCTTACCTGGTCATGCAAATACTCTGGATTTTAGTCAGAAGGGTTTACTTGCTTGCGGTAATGGCTCATTGATCCAGGTTCTGCGAGATGTTTCTGGTACACAAAATTATTCCAGGTACATGACTCATTCCATGGTGAAAGGTTACCAGGTAGGAAAATTAATATTTCGACCATATGAAGACGTTTTAGGTATAGGGCATTCCACGGGTTGGTCTAGTATTCTTATTCCAGGAGCTGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTCGAAACTTCCAAACAGAGAAGAGAAAAGGAAATACGGGCTCTACTTGATAAGCTTCCCCCCGAGACTATCATGTTGAATCCCAGCAAGATTGGAACGGTGAAACCAAAAAGAGAGAAGCCAACAAAACAAGAGAGGGAGGCTGAGGTGGAAGCTGCTGTTGAAGCTGCTAAGGGCATGAAACTGAAGAAGAAGACAAAAGGAAGAAACAAACCTGGTAAAAGGGTACAGAAAAAGCAAGAGGCACTTAGTAGAGTGAAGAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAACATGTCAAGAAAGAAGCAGAAAACTAGTGAGGGTGTTGAACTACCAAAATCTTTACAACGGTTTGCTCGTAAAAAAGCATCATCGTGA 1764 0.4348 MGPEQQDGGRNIVNYGNIRIRFRGINTTLLLCARPKPCLEMGKTEENDALTKNKPPTEKDILAELELKMKKYLRGESANLEVQVIEIAGIETLVLKDKKLKGQLAVKEQLYGKSAQAAAKAEKWLMPSEGGYLEAEGLEKTWRIKQETIAHEVDISSSRKQYDIILPELGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLSLIRELQVRETVRDVVFLHNELFFAAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLKNHFLLATLNKFGQLRYQDVTMGSMVGNFRTGLGRTDVMQVNPFNGVVSLGHSGGTVTMWKPTSSAPLIKMLCHQGPVSALAFHSNGHLMATAGKDKKVKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSRYMTHSMVKGYQVGKLIFRPYEDVLGIGHSTGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRALLDKLPPETIMLNPSKIGTVKPKREKPTKQEREAEVEAAVEAAKGMKLKKKTKGRNKPGKRVQKKQEALSRVKRPYLEQKIQEEENMSRKKQKTSEGVELPKSLQRFARKKASS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00949 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 362 - -
Vian3g00949 587 Gene3D - 296 403 IPR015943 GO:0005515
Vian3g00949 587 SMART BING4CT_2 407 487 IPR012952 -
Vian3g00949 587 MobiDBLite consensus disorder prediction 519 587 - -
Vian3g00949 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 369 IPR001680 GO:0005515
Vian3g00949 587 FunFam U3 small nucleolar RNA-associated protein 7 160 442 - -
Vian3g00949 587 SUPERFAMILY WD40 repeat-like 165 436 IPR036322 GO:0005515
Vian3g00949 587 SMART WD40_4 363 397 IPR001680 GO:0005515
Vian3g00949 587 SMART WD40_4 157 196 IPR001680 GO:0005515
Vian3g00949 587 SMART WD40_4 321 360 IPR001680 GO:0005515
Vian3g00949 587 SMART WD40_4 199 236 IPR001680 GO:0005515
Vian3g00949 587 PANTHER WD-REPEAT PROTEIN BING4 46 582 IPR040315 -
Vian3g00949 587 MobiDBLite consensus disorder prediction 534 570 - -
Vian3g00949 587 MobiDBLite consensus disorder prediction 492 507 - -
Vian3g00949 587 MobiDBLite consensus disorder prediction 486 507 - -
Vian3g00949 587 ProSitePatterns Trp-Asp (WD) repeats signature. 347 361 IPR019775 -
Vian3g00949 587 Pfam WD domain, G-beta repeat 330 360 IPR001680 GO:0005515
Vian3g00949 587 Pfam BING4CT (NUC141) domain 408 486 IPR012952 -
Vian3g00949 587 Gene3D - 140 295 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00949 170 383 U-box Gene Family AT2G33340 26.106 1.94e-11 64.7