Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00939 ATGGATGTGCCGAAGCACCGTGCCACTCGAACAACCTCTCTACGGGACGTCTCCGACTTCTCCAAGATGGAAGTAACCGGAAGCTGGGACGCCCTCGAATGGACCAAAATTGAGCCAATTACGCCCTTCGTCTCGAATGCGAGTTTCGATTTCTTGATCGAGGCGGAGCAAGTTGTCGCCGAAGGACATGGTGTTGTTCTTGTTAATACAGATGATGCTGGCACATTGATGGTAACAAATTTCCGTCTTATTTTTCTGAGTGAGGGAACTAGAAAAGTTATTTCCCTTGGAACGATTCCACTAGCAACCATTGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCAAATAATCGTTCTGTAGACAAGACACCAGCTCAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTTTAGTCTTCAGTTTCAGACCACGTACAAAACAGAGACGTTTGGTGTTTGATGCGCTACTGAGGTGTACAAAGCCAACAAGATTATGGGATCTTTATGCTTTTGCATCAGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTCCGTTTACTAGATGAATATTGTCGGCTTCTTTGCCTAGGTTCTTATCATGCATCAATCGATATAATTGAAAATGGGTCGTTCACCTGGTCAAATGAACTATGGAGAATAAGTAGCGTGAATTCCAGTTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATCATTAGTGATGAAGAAGTGCTCCAGGCATCCAGCTTCCGTGCAAGATGTCGACTGCCTGTAGTTTCATGGTGCCATCCATTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTTGGTATTATGATGAACATGAGGAGCAACATGGATGAAAAACTTGTGGCCGGACTCTGTAGCAAGCTAGATAATGGCTCAAGGAGAAAGTTATATATTGTTGATGCACGGCCAAGAAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCGTCAAACTATTTTCAATCTGAGGTAGTCTTCTTGGGGATAGACAACATCCATGCGATGAGAGACAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAGAGCGTCATCAGATGGAATGTCCTCTTTCTTGAGACAAGGTGGGTCTACGTGGGGTGGTGGCAATCTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACATTGGATGGTTACTGCATGTTCAGAATGTGTTGGCTGGAGCAGCTTGGATTGCTGCTCGTGTTGCAATTGAAAACTCTTCTGTTCTTGTGCATTGCAGTGATGGATGGGATAGAACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATACTATCGGACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTTGCTTTTGGTCATCCATTTTCTGACCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAACATGCCTTTTGAGTTATCTAGGCAGCCTTCAACTGGAAATTTTGCACCATCACCCATGCACCAGTCAACAGGAACATTTTCATCACAACCTCCAGCTTCATCTCACTCCCATAACTCCAACAACTATTCTCCTATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTATTGCGGATGTATCCTTTTGCTTTTCAATTCTCGGCGGCTTTCCTGGTGGACTTCATAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAAGGAGAGGCAGAAATGCAATGTTTTTGAGGCATGTGGATGTCTGTGGGTTTATTTAGCTGATTTACGGACATCAGAAGGAGGTTCCCATGTGCATTACAATCCCTTCTATGATCCACTCAAGCATAATGGTCCTCTTCTACCCCCAGCAGCAGCATTGGCGCCTACGTTATGGCCCCAATTCCACCTTCGTTGGGCATGCCCAGAAGAAGCACAAGCTGGGGAGATTGAAGCGCAATGCAGGAAGATAGTTATGAAATGCTCTGAGACGCAGAAGGCTAAAGAAATGGCAGAAAGAAAAGTTAAAGAAGTTACAAATTCCATGGAGTCACTGAATGCTGAATTACGACGTGAGAAGCAGATAAACAGCTCAGCTATGAACATGGCAAAGAGTGTGAGCAAAGAAAATATGGCTATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTGGTGAATGCACTGTTGACATTGAAAGCAACCCAGACATTCTGTGTTGTTCCTCAAGAAAAGAATCAAATAGTAATGTGCGTGATGACAAAACGGACCCACCTGTTTCAGTACTAGTTACAGCAGATGATGATGATGATGGAAACAATGGGATTGTTAGGGTATGTGAAACTCTATGCCCATTTGGCTCTGGAGGTGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAATTAGGTAGCCAGTATGTTGGCCTCAAGGCAAACTTTGATGCATTTGACCAACTGTCAATTAATGATAGTTATTTCAAGTCTGAGTGA 2547 0.4409 MDVPKHRATRTTSLRDVSDFSKMEVTGSWDALEWTKIEPITPFVSNASFDFLIEAEQVVAEGHGVVLVNTDDAGTLMVTNFRLIFLSEGTRKVISLGTIPLATIEKFNKIVVKVQSNNRSVDKTPAQRLLQVIGKDMRILVFSFRPRTKQRRLVFDALLRCTKPTRLWDLYAFASGPSRFKNTTPLVRLLDEYCRLLCLGSYHASIDIIENGSFTWSNELWRISSVNSSYTMCQSYPFALVVPKIISDEEVLQASSFRARCRLPVVSWCHPLTGAVVARSSQPLVGIMMNMRSNMDEKLVAGLCSKLDNGSRRKLYIVDARPRKNALANGAMGGGSESSSNYFQSEVVFLGIDNIHAMRDSFVRLREYMDTHGRASSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDIGWLLHVQNVLAGAAWIAARVAIENSSVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSVSGTGNMPFELSRQPSTGNFAPSPMHQSTGTFSSQPPASSHSHNSNNYSPIFLQWVDCVSQLLRMYPFAFQFSAAFLVDFIDCMLSCRFGNFLCNSEKERQKCNVFEACGCLWVYLADLRTSEGGSHVHYNPFYDPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRKIVMKCSETQKAKEMAERKVKEVTNSMESLNAELRREKQINSSAMNMAKSVSKENMAIKRAIQSMGCKVHVSGSGECTVDIESNPDILCCSSRKESNSNVRDDKTDPPVSVLVTADDDDDGNNGIVRVCETLCPFGSGGGGCRWPNGGCAQLGSQYVGLKANFDAFDQLSINDSYFKSE 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00939 848 Coils Coil 675 709 - -
Vian3g00939 848 SMART gram2001c 42 111 IPR004182 -
Vian3g00939 848 Gene3D - 63 162 IPR011993 -
Vian3g00939 848 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 654 IPR029021 -
Vian3g00939 848 PANTHER MYOTUBULARIN-RELATED 43 757 IPR030564 -
Vian3g00939 848 MobiDBLite consensus disorder prediction 511 533 - -
Vian3g00939 848 SUPERFAMILY PH domain-like 53 174 - -
Vian3g00939 848 CDD PTP-MTM-like 261 552 - -
Vian3g00939 848 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Vian3g00939 848 ProSiteProfiles Myotubularin phosphatase domain. 202 650 IPR010569 -
Vian3g00939 848 Pfam Myotubularin-like phosphatase domain 171 592 IPR010569 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00939 1 846 Protein tyrosine phosphatase (PTP) family AT3G10550 66.002 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00939 K18081 - gmx:100781842 1528.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00939 3 10214731 10236621 Vian3g00939 3 10214731 10236621 ECH