Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00930 ATGGGTGACCCATATGGGTTGCCGGAGGATCTCCGGCGTTTTATACCACCCAGAACCCATATGAACCCTTCAAGCACGCACCTACTTGAACCACTGTGTCTTCACCATGGTCTCAGTCCGGTTGCTGCTGCCACTACAATTCCACCCAACACCTATGACCACAACATGGTTGGGGACGTTTTCTTCCCTCGCGCCTTCACTCACTTTGCCCATCATCATGACTATTCCTCTTCTTCTGGTGTCAACCCTACCAATGCTGCCACTGCTGCTGTCTCGGATCATGCATTCTGCAGCATGGAGAGTGCAGAGAAAGGGTGGTTCGGTTTTGATTCCGGGAACAACAGGTGGCCAAGACAGGAGACCCTTTCGCTTCTAGAGATCAGATCTCGTCTTGATTGCAAGTTCAGAGAGAATAATCAGAAAGCACCATTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACGAAGGAAGGTAAAGCCAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTTGAAGCAATATGTGGAGACCAAGCAAACGCAAATCATGCCTCAACTTCAGATAAAACCCATCGTGCTGGTGCAAACAATGCTAACATTCAAACACCTACCTTCACAATTAACCAAGAACACAATGGGGATTCTGGTAATAACCCCAAGTGCTCAGAGAGCATCAGCATCTCAAACTCATCTGAATTCGAGACATCCTCGTCTGAAAACAACGAGGAGGATCTTTCAGCCATTGCATTCATGATGAGGCAGTCAAGGGAGAAGCAGAAAGCGTTGTTGGATGAAAGACAAAGTGATCAGAGGAGGTTAAGAAAAAGCTGGAGAGCAAAAGTGGAGGAGAATGTGGATTCCCACATGAGGAAGATCATAGAGACTCAAGATGCTTGGATGGAGAGAATGCTGAGCGTTGTTGAACAAAGAGAGCAAGAGATGTCATCTAAGGAGGAAGAAAGGAAGAGGAAAGAGTCAATGTGGTTTGACCAACAGGTGCATGAACTGTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACGTTGGGATAGAACTGGAAGCAATGCCCCTGGATGAAGCTATGGTTGAAGAAACAGGAAATAAGAACAAGGACCAAGGAAAGATTGAGAGCAGTGAATTTCCGTCGGAGGATCAAAGAAGTAGCAGTAGGTGGACAGAAATGGAGATTTCAAATTTGATACAGCTAAGGAGTGGTTTTGAGCAACGATTCAGAGAAAATGGGTACTTGGAGAATGGGCTTTGGGATGAAATATCAGCAAAACTGGGTTGTTTGGGATTTGATAGGAGTGGAAGTGAGTGCAAGCAAATATGGGATGAGATCAGCATCTCTCTGAGAAGGACAGTGGATGAGTGTGATGGTGGGAAAAGAAGGCCTTGGTATTTGGGACTTAAGGTGACGGATGATGATGATCTTTGA 1551 0.4533 MGDPYGLPEDLRRFIPPRTHMNPSSTHLLEPLCLHHGLSPVAAATTIPPNTYDHNMVGDVFFPRAFTHFAHHHDYSSSSGVNPTNAATAAVSDHAFCSMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDCKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQANANHASTSDKTHRAGANNANIQTPTFTINQEHNGDSGNNPKCSESISISNSSEFETSSSENNEEDLSAIAFMMRQSREKQKALLDERQSDQRRLRKSWRAKVEENVDSHMRKIIETQDAWMERMLSVVEQREQEMSSKEEERKRKESMWFDQQVHELWAKEKAWVEARDAALIEVVRKHVGIELEAMPLDEAMVEETGNKNKDQGKIESSEFPSEDQRSSSRWTEMEISNLIQLRSGFEQRFRENGYLENGLWDEISAKLGCLGFDRSGSECKQIWDEISISLRRTVDECDGGKRRPWYLGLKVTDDDDL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00930 516 SMART sant 112 175 IPR001005 -
Vian3g00930 516 SMART sant 425 488 IPR001005 -
Vian3g00930 516 CDD GT1 114 180 - -
Vian3g00930 516 Pfam Myb/SANT-like DNA-binding domain 114 201 IPR044822 -
Vian3g00930 516 Pfam Myb/SANT-like DNA-binding domain 427 498 IPR044822 -
Vian3g00930 516 PANTHER FI21293P1 76 503 - -
Vian3g00930 516 MobiDBLite consensus disorder prediction 403 426 - -
Vian3g00930 516 Gene3D - 116 178 - -
Vian3g00930 516 Gene3D - 429 491 - -
Vian3g00930 516 CDD GT1 427 492 - -
Vian3g00930 516 ProSiteProfiles Myb-like domain profile. 114 173 IPR001005 -
Vian3g00930 516 ProSiteProfiles Myb-like domain profile. 421 486 IPR001005 -
Vian3g00930 516 FunFam Trihelix transcription factor GT-2 429 491 - -
Vian3g00930 516 Coils Coil 327 354 - -
Vian3g00930 516 FunFam trihelix transcription factor PTL-like 116 178 - -
Vian3g00930 516 MobiDBLite consensus disorder prediction 233 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00930 Vian-Chr3 10130570 10132971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00930 115 491 Trihelix Transcription Factor Family AT5G03680 44.416 4.26e-88 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian3g00930 Myb_DNA-bind_4 7.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00930 - - gmx:100787750 808.135