Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00922 ATGCACTCCTCCGCCGAGGACGACTCCGACAACCCTGCCACCACCGCGGGCTCGGAGTGGACGTTCTCCGCCAGGAACCACGCACCGTCGTCGGACCCCTGCTGGGAAGCCATAGAGCGCGGCGGCGGGACCCTGGGATTGGGTGACCTCCGGTTTGTGCAGCGAGTGGGGAGCGGCGATATCGGAAGCGTGTACTTGGTGGAGCTGAAGGGCTCGAACGGGTGCCTGTTCGCGGCAAAGGTGATGGACAAGAAGGAACTCGTGGCCAGGAACAAAGACACGAGGGCAAAGGTTGAGAGAGAGATTCTGCAAGCGGTGGATCACCCTTTTTTGCCAACTCTTTACGCGTCGCTCGATTCCCCGCGCTGGTCTTGCCTCCTGACCGAGTTCTGCCCCGGCGGTGACCTCCACGTCCTCCGCCAGCGGCAGCCCGATAAACGCTTCCACCACGCCGCCGTTAGGTTCTACGCATCTGAGGTTGTGGTTGCGTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAATGTGCTCATAAGATCGGACGGTCACGTAATGCTCACTGACTTTGACCTCTCACTGAAAGGCGACGACACAACATCAACGGCTCAGATCGTGTTCGATCAAGATCCACCCTGCAACACCTGTTCCAACGACCATTCCAAGAACCAATGCGCCCCCGCCATGTCATCCTGCATGCTGCCAAATTGCATTGTGCCATCTGTCCCATGCTTCCACCCGAAACGCGGTCGTAGCAAGAGGTCATCGCGGTGTGGGTCGGTGGAGATCGTGGCGGAGCCAATAGAAATTCGGTCGACGTCGTTCGTTGGGACCCATGAGTACTTGGCGCCGGAAGTGATTTCCGGGGAGGGTCACGGTAACGCCGTTGATTGGTGGACACTGGGAGTATTCATTTTTGAACTGTTCTACGGGATGACACCCTTCAAAGGGGTTGAGCATGAGCTAACCCTAGCGAACATAGTGGCACGTGCCCTTGAGTTCCCTAAGGAGCCAATGATCCCAGGAGCAGCTAGGGATTTGATCTCACAACTGTTGGTGAAGGACTCAACAATGAGACTGGGTTCAACAATGGGTGCCCTAGCAATCAAGCACCACCCCTTCTTCAATGGAGTTAATTGGGCATTGTTAAGATTCACGGTGTCTGTGGTGGTTGCAATTCTGGTATCGTATTCGAATTAG 1215 0.5564 MHSSAEDDSDNPATTAGSEWTFSARNHAPSSDPCWEAIERGGGTLGLGDLRFVQRVGSGDIGSVYLVELKGSNGCLFAAKVMDKKELVARNKDTRAKVEREILQAVDHPFLPTLYASLDSPRWSCLLTEFCPGGDLHVLRQRQPDKRFHHAAVRFYASEVVVALEYLHMMGIIYRDLKPENVLIRSDGHVMLTDFDLSLKGDDTTSTAQIVFDQDPPCNTCSNDHSKNQCAPAMSSCMLPNCIVPSVPCFHPKRGRSKRSSRCGSVEIVAEPIEIRSTSFVGTHEYLAPEVISGEGHGNAVDWWTLGVFIFELFYGMTPFKGVEHELTLANIVARALEFPKEPMIPGAARDLISQLLVKDSTMRLGSTMGALAIKHHPFFNGVNWALLRFTVSVVVAILVSYSN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00922 404 FunFam Serine/threonine-protein kinase OXI1 135 203 - -
Vian3g00922 404 ProSiteProfiles Protein kinase domain profile. 50 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00922 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Vian3g00922 404 Gene3D Phosphorylase Kinase; domain 1 49 134 - -
Vian3g00922 404 Gene3D Transferase(Phosphotransferase) domain 1 276 389 - -
Vian3g00922 404 SMART serkin_6 50 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00922 404 MobiDBLite consensus disorder prediction 8 28 - -
Vian3g00922 404 MobiDBLite consensus disorder prediction 1 29 - -
Vian3g00922 404 SUPERFAMILY Protein kinase-like (PK-like) 35 396 IPR011009 -
Vian3g00922 404 FunFam serine/threonine-protein kinase D6PK-like 275 397 - -
Vian3g00922 404 PANTHER FLIPPASE KINASE 1-RELATED 18 391 - -
Vian3g00922 404 Pfam Protein kinase domain 277 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00922 404 Pfam Protein kinase domain 52 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00922 404 FunFam serine/threonine-protein kinase D6PKL2 49 134 - -
Vian3g00922 404 Gene3D Transferase(Phosphotransferase) domain 1 135 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00922 Vian-Chr3 10027458 10030622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00922 52 391 AGC Kinase Gene Family AT3G44610 67.324 8.99e-177 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vian3g00922 Pkinase 3.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00922 K08286 - gmx:100786154 708.368