Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00919 ATGGAGCTTCTCTCTGTGACTGGCTCACTCTGCAAAGGCCAAACATTTTCCTTTCAGAAACCAAAGACATCCCAAATTCATGAACTTCCAATAAACGTAAGATTACCCGACACAATCAACCATTCCAATCTTTCTTCTTCTTCTTCATGTAATTGCTCTATTACTAGGGTAGCAGCAACAACATACCCTTCCTTCAATTCTTCCACCACACAGAACCGCCATTGGATGGTGGTCCTGGACACACCTCCTCAAGGGCTCAATTCAAAGTCACATGTCATTGATTATTATGTCAACATTCTTCAAACAGTTATCGGCAGTGAGAAAGATGCTCAGATGAGTATATACGATGCTTCGTGGGACACCCACTTCGGGTTTTGTTGTGACGTTGATGAAGAAATATCCTCCCAGCTGGCCAGTTTGCCTGGGGTGTTGTTGGTTAGGCCTGACCCGGATTTCAATTCTTTGAGAAAGGACTATAGTTTATCAAGGGACCAGGTAGTTAACCCGTCAGGATTACAAAATATTACCAATATGTTGTTTCCTTCGGGAAATTCTAAGCATTGGCTTGTTAAAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGATTACTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGACGGATGCACAAATGTGTATATATCATGTCTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGACGAGGACTGTGCTCAAGAGCTAGCTGGTTTGCCAGGTGTCTTATCAGTTCAGCCAGATAACAGTTTTGAGTCTGAAAATAAGGATTATGCAGGTAGTACCTTAGAAAATAGTTGGAATATTTCCAACTCTTCTGAAGCAAGTCATGAAGCGCCCTTGAAAACAAAGAAATTGTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGTGAGCTAGTTGAAGTTAAAGTTATTATTGACAAGATTTCAAAAAGATCAAAGGGTTATGCATTTGTTGAATACACCACAGAGGAAGCTGCCAGTGCTGCGCTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCGCCAAGATACAACAGGAATCGTGCTGAATCATCAAGTTGA 1173 0.416 MELLSVTGSLCKGQTFSFQKPKTSQIHELPINVRLPDTINHSNLSSSSSCNCSITRVAATTYPSFNSSTTQNRHWMVVLDTPPQGLNSKSHVIDYYVNILQTVIGSEKDAQMSIYDASWDTHFGFCCDVDEEISSQLASLPGVLLVRPDPDFNSLRKDYSLSRDQVVNPSGLQNITNMLFPSGNSKHWLVKMDKPGVEVVTKAQIVDYYAQILTKVMGNETDAQMCIYHVSWKTNFGFCCELDEDCAQELAGLPGVLSVQPDNSFESENKDYAGSTLENSWNISNSSEASHEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNRAESSS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00919 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Vian3g00919 390 SUPERFAMILY RNA-binding domain, RBD 285 385 IPR035979 GO:0003676
Vian3g00919 390 FunFam Organelle RRM domain-containing protein 1, chloroplastic 176 265 - -
Vian3g00919 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 58 153 IPR037045 -
Vian3g00919 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 179 266 IPR037045 -
Vian3g00919 390 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 178 367 IPR039206 GO:0016554
Vian3g00919 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 366 IPR000504 GO:0003723
Vian3g00919 390 SMART rrm1_1 299 372 IPR000504 GO:0003723
Vian3g00919 390 FunFam Organelle RRM domain-containing protein 1, chloroplastic 266 390 - -
Vian3g00919 390 Gene3D - 268 390 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00919 Vian-Chr3 9997532 10000043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00919 290 385 C2H2 Transcription Factor Family AT2G19380 31.250 1.12e-11 64.3