Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00897 ATGTCTGAGACGATTGTGGCACATTCGAGTTCTTGGAGCAGGGCACTTGTCGCGATCTCGCCCTATACCTTCTCCGCCATCGGTATCGCGGTCGCAATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGGATCTACATCACCGGTAGTAGCTTGATCGGCGCTGCAATCAAGGCTCCTCGAATCACTTCCAAAAATCTCATTAGTTCTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCTATTATTCTTCAAACAAAATTAGAAAGCGTTCCAGCAGCAAATATCTATGACCCAGAGTCTCTTAGGGCTGGATATGCAATCTTTGCTTCTGGATTAATCGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTATCTGATGCTCAGAATTCCTCCCTCTTCGTGAAAATTCTTGTGATTGAGATCTTTGGTAGCGCGCTTGGGCTATTTGGAGTGATTGTTGGAATTATTATGTCAGCACAAGCAACATGGCCAACCAAAGTTTAG 549 0.4627 MSETIVAHSSSWSRALVAISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISSSVIFCEAVAIYGVIVAIILQTKLESVPAANIYDPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00897 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 40 64 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vian3g00897 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 151 174 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vian3g00897 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 124 150 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vian3g00897 182 Pfam ATP synthase subunit C 113 172 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vian3g00897 182 Pfam ATP synthase subunit C 27 88 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vian3g00897 182 FunFam V-type proton ATPase proteolipid subunit 22 179 - -
Vian3g00897 182 Gene3D - 22 179 IPR035921 -
Vian3g00897 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 8 176 - -
Vian3g00897 182 SUPERFAMILY F1F0 ATP synthase subunit C 105 173 IPR035921 -
Vian3g00897 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 108 172 - -
Vian3g00897 182 SUPERFAMILY F1F0 ATP synthase subunit C 20 91 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00897 Vian-Chr3 9717439 9719786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00897 8 181 Primary Pumps ATPases(2) AT2G25610 90.805 1.16e-107 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00897 K03661 - gmx:100527177 317.39