Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00890 ATGAAAAGAAAGGGAGCTTACGAGAACCAAGAAGCTGTGAACAGAGGTCCTTGGTCTGCTGAGGAAGATCAAATTCTTATTAACTACGTTCACCTCCATGGAGAAGGAAAATGGGGGCAGATTTCCAGAAGAACTGATATCAAGAGAGGAAACATTTCTTCTGATGAAGAAGATCTCATTATCAGACTACATAGCCTCCTAGGGAATAGGTACATTGGTTTATAA 225 0.4044 MKRKGAYENQEAVNRGPWSAEEDQILINYVHLHGEGKWGQISRRTDIKRGNISSDEEDLIIRLHSLLGNRYIGL 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00890 74 CDD SANT 17 44 IPR001005 -
Vian3g00890 74 Pfam Myb-like DNA-binding domain 15 44 IPR001005 -
Vian3g00890 74 SUPERFAMILY Homeodomain-like 13 71 IPR009057 -
Vian3g00890 74 SMART sant 14 69 IPR001005 -
Vian3g00890 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 44 IPR017930 -
Vian3g00890 74 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 43 - -
Vian3g00890 74 Gene3D - 6 51 - -
Vian3g00890 74 ProSiteProfiles Myb-like domain profile. 10 49 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00890 Vian-Chr3 9635778 9636197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00890 8 71 MYB Transcription Factor Family AT5G52600 45.783 2.29e-17 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian3g00890 Myb_DNA-binding 6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00890 K09422 - gmx:547459 110.538