Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00889 ATGGGAAGAAAGGCAAATTGTGAGAATCAATACGCTATGAACAGAGGTCCTTGGTCTGCTGAAGAAGACAAAATTCTTATGAACTACGTTCAAGTCCACGGAGAAGGTAAATGGAGAGAGCTTTCCAAAAGAGCAGGGTTGAAAAGATGTGGCAAGAGTTGTAGACTTCGATGGCTGAATTATCTAAAGCCAGATATTAAGAGAGGAAACATTTCTTCTGATGAAGAAGATCTCATTATCAGATTACACAAACTCTTAGGGAATAGATGGTCTCTCATTGCGGGACGATTACCAGGGAGAACAGACAATGAAATTAAGAACTACTGGAATACTTATTTGAGAAAGAAGGTAGAGCACAAGCACAGTCAAAACGACGTTGTTGGCCATGACGGCAACATTCCTATCAACTTAACCTCCAAAACTTCCTTGGGTGATGTTCTTGATCCTACAAAATCAGCTCACCCAATGATGATTAAACCCAAATCAATGAGGTGTACCAAGGTTATGATGCCAGGCAATGATTCGGTGAACACGATGAATTTCATCGCAACGACCTGGGACCATAACCCTTCTGCTTCCATGCCACAGGATGATGAACATAACCACTGTTTCACCGGTGTTCTTCAAGACTTTGACCTCGGTGACTTTTTAATGTCGTACGAGGATGATTGTCGCTTCAATGGGTATGCTTGTGTTGAAATACCCCAACATATTTTTGAAGATCAGACTTGGAGGCTTGATGATTCCATGGTGGAAGAAACCTGGTACGAGAATTGGAAGCACGACACCTACTTTTCACAAGAGCAAGATATGGACATGGATATGGGCTTTTCTTCATTTTAA 843 0.4152 MGRKANCENQYAMNRGPWSAEEDKILMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEHKHSQNDVVGHDGNIPINLTSKTSLGDVLDPTKSAHPMMIKPKSMRCTKVMMPGNDSVNTMNFIATTWDHNPSASMPQDDEHNHCFTGVLQDFDLGDFLMSYEDDCRFNGYACVEIPQHIFEDQTWRLDDSMVEETWYENWKHDTYFSQEQDMDMDMGFSSF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00889 280 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Vian3g00889 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vian3g00889 280 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vian3g00889 280 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vian3g00889 280 FunFam MYB-related transcription factor 14 67 - -
Vian3g00889 280 Gene3D - 72 131 - -
Vian3g00889 280 FunFam Transcription factor TT2 71 135 - -
Vian3g00889 280 SMART sant 14 64 IPR001005 -
Vian3g00889 280 SMART sant 67 115 IPR001005 -
Vian3g00889 280 CDD SANT 72 113 IPR001005 -
Vian3g00889 280 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vian3g00889 280 Gene3D - 15 67 - -
Vian3g00889 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Vian3g00889 280 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vian3g00889 280 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 167 - -
Vian3g00889 280 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00889 Vian-Chr3 9619732 9620759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00889 7 117 MYB Transcription Factor Family AT3G13540 72.072 2.53e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g00889 Myb_DNA-binding 9.3e-16 CL0123