Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00888 ATGTCGGCAGCTTCCTCATCCACTCCATTCTTGGGAATCAGAGAAGAAAGCCCTCAGATTACAGCACACCATCAACCCTCCACTGTGGCTCCAATCGCAGTGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAAATCCAGACGCAGAGGTGATAGAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGATTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTTCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCAAAAAAGAAAGGTTTATCTTTGTCCCGAGCCCACCTGTGTCCATCATGATCCTTCAAGGGCCTTGGGAGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGCACTCTCTTTTCTAGGCGTGACAGTTTCATCACTCATAGGGCGTTCTGTGATGCGCTGGCCCAAGAGAGTGCAAGATTCCCCAGTAACTTGAACCCTTTGGGGACTCATCTGTTTGGCACAAACCACACTAGTTTAACCCTATCCCAAGTGGGTAATCAACTTTCCCAAGTTCAAAATCAGAACCAAACAACCTCTAACAACATCTTGCGCCTTGGAAATGTTGGTGCAGCTGTAAAGTTTGAGCACTTGATTCCACCTCTAAATCAGTCTTCATTTGGACACTCACCACAATCAATGCCTTCTTCAGCTTTCTTCATGAATGACAGCACCAATCAAACATTATTTGAAGAACACCAATCGCAACAAGGACCAATATTCTCAAACAAACAACTACATGGCCTAATGCAGCTCACTGATCTTCATGCCAACACCAACAACTCCGATTCTTCATCAGTTGCTGCTCCTGATTCCAATCTTTTCAACCTCAGCTTCTTCCCTAGCAGCAATAGCACTAGCACCATTATCTCTGATCAATTCAACAACATAAGCGGTAGTGACCACGGAACAACACCACCACCACTCTATCTTAATAACAACCCTGCAGTAATTGACCATCTTGGTTCGGGTTTTTCTTCGCTCTTTGGTGATTCATTAGAAAACGTATCGTCCCCTCATATGTCTGCCACTGTGTTGCTTCAAAAAGCGTCACAAATGGGTTCGACCACAACCTCCAACGGTTCTTCTTTACTTAGAGGAATGTGTAGCAATAATGGTTCCAAAGCTGAAAATGGTCACCACCACCACAGTCTTCAAGGGTTGATGAACTCTATCGCCAATGGAAACACGTCCTTGTTTAGGAACATGCAAGGGAACGAAAACAACCTTTGTGGGTTTCACAACCTGGACGAGTCCAACAATAAGTTGCCCCAGAATCTTAGCGTTAACTTTGGAGGTTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAATGGTGAGAAATATGAATGGTGGATTTTCACAGAGAGAACAACTACAACAACAACAACGTGTCATGGGTTCTCAGTTCTTTGGACCTTGA 1605 0.4436 MSAASSSTPFLGIREESPQITAHHQPSTVAPIAVPQKKRRNQPGTPNPDAEVIELSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEQKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARFPSNLNPLGTHLFGTNHTSLTLSQVGNQLSQVQNQNQTTSNNILRLGNVGAAVKFEHLIPPLNQSSFGHSPQSMPSSAFFMNDSTNQTLFEEHQSQQGPIFSNKQLHGLMQLTDLHANTNNSDSSSVAAPDSNLFNLSFFPSSNSTSTIISDQFNNISGSDHGTTPPPLYLNNNPAVIDHLGSGFSSLFGDSLENVSSPHMSATVLLQKASQMGSTTTSNGSSLLRGMCSNNGSKAENGHHHHSLQGLMNSIANGNTSLFRNMQGNENNLCGFHNLDESNNKLPQNLSVNFGGSDKLTLDFLGVGGMVRNMNGGFSQREQLQQQQRVMGSQFFGP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00888 534 MobiDBLite consensus disorder prediction 1 26 - -
Vian3g00888 534 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Vian3g00888 534 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Vian3g00888 534 SMART c2h2final6 107 137 IPR013087 -
Vian3g00888 534 SMART c2h2final6 142 162 IPR013087 -
Vian3g00888 534 SMART c2h2final6 66 88 IPR013087 -
Vian3g00888 534 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Vian3g00888 534 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vian3g00888 534 MobiDBLite consensus disorder prediction 1 50 - -
Vian3g00888 534 Gene3D Classic Zinc Finger 48 116 - -
Vian3g00888 534 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vian3g00888 534 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 524 IPR031140 -
Vian3g00888 534 Gene3D Classic Zinc Finger 120 198 - -
Vian3g00888 534 FunFam protein indeterminate-domain 12-like 45 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00888 Vian-Chr3 9607225 9610674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00888 36 512 IDZ Gene Family AT2G02070 47.328 4.39e-126 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g00888 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00888 K25870 - gmx:100780268 798.89