Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00870 ATGGAGAGGTACAACGGTCAGCGGTGGAAACCTACTGATGATCAGGTCAAAATGATGACCAATATCTTCAACTACGGGGTCACACATCCCAGCAGAGCCCAAGTCGTCGAGATTGCATCTCGACTCAGGGCCTTCGGAGAAGTCAGTGAATATAATGTACACTGCTGGTTCAACAATCACGGTAACCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCAGTGGCACTCAATTTTCTCAGTTACCGCTATACATGTATGAAAATGGCTGGGTAATTATGAGGGCGCCGAGGCTGCTGAATTTGTTCCCCGTTCCAATCATCATCGAAGATGATAGGGACGAACGACAAATCCCTCCACCCATGCTTCTCACATTCCGAACCAGAGCTCCCTCGACGGAGCTCTCCCTTAGACCACCACAACCCGTTCGAGAATTTTTCCGTTAA 444 0.5023 MERYNGQRWKPTDDQVKMMTNIFNYGVTHPSRAQVVEIASRLRAFGEVSEYNVHCWFNNHGNRVRRWQAEIDPSGTQFSQLPLYMYENGWVIMRAPRLLNLFPVPIIIEDDRDERQIPPPMLLTFRTRAPSTELSLRPPQPVREFFR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00870 147 Gene3D - 6 71 - -
Vian3g00870 147 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Vian3g00870 147 PANTHER WUSCHEL-RELATED HOMEOBOX 13 7 70 IPR044559 GO:0003700
Vian3g00870 147 SUPERFAMILY Homeodomain-like 7 68 IPR009057 -
Vian3g00870 147 Pfam Homeodomain 7 66 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00870 Vian-Chr3 9350209 9350754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00870 8 70 Wox Gene Family AT5G59340 41.270 8.35e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian3g00870 Homeodomain 3.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00870 - K06662 vum:124821070 257.684