Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00863 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGAGTTGCCACTGGCCCCGGAATTTCGCCCTACGGACACCGAATTTGCTGACCCAATTGCTTACATTTCAAAGATTGAGAAACAAGCTTCCAACTTCGGGATTTGTAAGATTATCCCACCATTGCCCAAACCTTCAAAAAAATATGTCTTTTCTAATTTGAATAGGTCACTCTTGAAGTGCCCGGATTTGAGTCCAGATAACAGTTCATTAGGTGTTTGTAACTCATTGAAATTCGGTTCTGGGGATGGTAGTAGTGATGGGGTGTCTCGAGCTGTGTTTACTACTAGGCATCAAGAACTAGGGCAGACTCAGAGTGTGAAAAAAGCCAAAGGAACGGTTCAGAATCCACAGTCAGGTGTTCATAAGCAAGTATGGCAAAGCGGGGAGGTTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCAAGAAGCTTGCTAGGGTCAGTGAAGGATGTTTCTCCGCTGGTTATAGAGTCTATGTTTTGGAAGGCAACTTTAGAAAAGCCAATATATGTGGAGTATGCGAATGACGTGCCTGGGTCTGCTTTTGAAGAGTCAAAGGGTCAATTTCATTATAGTCATAGAAGGCTAAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGTAATGGGTTGCGGAAGAGATACCCAAATTGATGACACTAAGGGTGCTTCTGTCCAAAGTGACGCTGACAAATGTTTACGGATGACCAAATCAGTTGATACTGTGTCAACATTTTCATCGAATGATGATTCACAACCTTTTAAAGAAAAGAGTTCAGATACCGGCAATGATATGCAAGGGACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACCTGCAAGTTATTGCACGATCGTCTGGCTCATTGACACGTTTTATGCCGGATGATATTCCTGGTGTGACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCACGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACATGGTATGCTGTTCCTGGAGATTATGCGTTTGCTTTTGAGGAAGTCATACGCACTGAGGGTTATGGTGGTAATATTGATCATTTAGCCGCTTTGAAACTTTTGGGTGAAAAAACAACTCTTTTGTCACCTGAGGTAATTGTTGCATCTGGAATTCCTTGTTGCAGGTTGACACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGTGTAGCCAAGGAGGCTGCAGTGCGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGCGTTCCAAGGACACTATTACCTGGGGTGCGCAGTTCTCGATTGAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCTTTCATAGAAGACATGGTACAGGAAAACAAGCTGCTATCCATTCTTCTTGGAAAGGAAGCTGCTAAAAGAGCTGTTTTATGGAAAGCTGAGTTGCTTCCAGATTCCAGCAAAGGTTTTCAGTTGCCTGATTTAACTTCTACAACTGGAACCTCTGTGGCAAACATGCCAAATATTAGTTCTGCCAAAAAAAGTGGTCATTATCTGCTTGATGATGAGATGAGTTTGTATATGGATTCTTTGACTAATATAGATATTGGTGGCGATGATCTTCCCTATCACTTCGAAACTGATTCCGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGGCTGTGATACAACCAACTGAGAAATTGACAATGGAACTTCCTGATAATCATCTAATTCAAGTTTCCTCTTCGGACTCTACTGCTGGTCTTCATAGTTCCATATCACGGGATCTATCTTTTTCTGAACTTTCATCAGTAAAGGAGATGCCAGATCAATCATTAAATAAGTGCAGTAAGTGTTGGAACACCTCCAGTAAATTTTTTAGGCCTCGGATTTTCTGCCTGGGGCATGCTGTTCAAATAGTAGATATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGTTTCAGCTAAATATGGTTTGTTGAAGTATCCTGGAATACCTTACATATTGGATGATATCTTAGCAGTGGCTTCCGGATTTCATGATTTCTCTCAGTGTGCTGTTGACCATACAAAAGACTATCAGAAAATAAAGGCACATGCCAGCGAAGTTGCGGTAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACGGCATCCCCAGAAAATTTAACCTTGATAGATCTGGCTGTTGATGGTGAAGAGCTTGATGAATGTGAAGATTGGACATCAACACTTGGCATTAACCTACGGAATTGGGTCCATACAAGAAATAATGCTCCTTCTAAACAAGTTCCTTGGACACTTGGGACATTGTTCCATGATAAATGTCCTGCTTCAAATATTTTAGCTTTAAATTGGCAGTCTCGGAGATTCCGGTCGAAAAGGTCAAGCCATTTAGCTCAGACTAAATCCTCTCACAGCATTGAGAGAAAGAAGGATGATCGGTTGGGTGGAAGAATAAATGACTCCACTGCTGACAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCACACGTGTTTCCCTGTAGCAAACATGGTCTGTGAACTCCAAGAGAAGTCCCAAAAGGTGTCTGCTACTTTAAGTGCGAATCATGATAGTTGTGTTTCTAAAACTCTTCAAGCTGAGGATTTAAGGACAGAGTGTGCATTGCCATGTGCTTCTGCTTGTACTGAAATGTCTTCAATGCATCCTGAAATCCAGATTGCTGAAATGCCCATTAGCACGAAAATGATTGCTGCTAAGTCACAACCTTCAAATTCCATTCCTGATCATGTTTTAATGATTGAAAAACTTGGAGCAGAGATTGAGAGTCAAACGATGCAGGAATCATATGTAGACAGAAATAATGATTTAACGCTCAGTCATTCTAAGATGCACCACAATACCAATGTCTCAGAAATATGTGGCAAGGAGAGCCAGGATTGTCAGTACAAGAAATGTTCTAGCACACTTTCAAATGCACCAGATGGAAATATTGAAATGATTAAAAAGACTGAAATTGCAGAAGCAGTTATCATTGATAGCCACTGTAATAGGTTAACATTGGATGATCAAGGGCATCAAGAATATCAGTCTAACTACAAAAGCAACAATGAGGAAGCTGCTGTATCAACTGCTTCAATGGTAAATCAATCTACACTTGCTTCTGTGGATGGAAACGTTGAAAGTCCAAATAATAATCATATCTCAGAAAGAATTAGTAGTCCTATTTTCCTAGAAAAGGCAAATGAGGAAGGAATTGATTCTATAAGCGAAATGGACAAGGAACCTCGAATTAATGAAAGCCCAATTAGCAAACATACTCCAAACGAAGTTTGTGAAGTTCGAAGAGAGCTTTATGCTTCTGTAGACTTGCAAAGTAACGGAATCTTGGATGATGAGCAACAAGTAACTCAGGGTGGAAAAAATAGCAAAAGGGAAATAACTCATGTTTCAACTGAACAATGTTGTCCTTCGTCTGGGCAGTGTCAGATTGAAAGTGTAAAAAAAATTAATGAGGACCCTGTTTGCAGTTATGCTGCAAAAGGTGAAAATAAAAGCGTAACTTCAATAGAGTTAGGATGTTCTGAAGTTTCAGTGGAAGCATGTCCTAGCAAAGATTCCTGTATGCAATTTATTCCAGATAAAGAAAAAGAAATGACAAACCAGTCAGTTAATAGAATTGATGAGGAACTTTTCTCTGGATCGGATACATCGACAAAAGACTCTTTCCTATCAGTGCAGGAATGCTCAAAAATTGAGAACGAGATTTATGTTACAGAAAACATAAATGAAATCAAAGCTGATTTGTCACAATATAAAAGGGGGCTGGAGAGTTGTGAGTTAGCTACAGAAGTTCCCAGATTAAATTCTGAGAATAAAAAAAAGAGGAAAGTGGAACGAACAGGGAACCGATCTAATTCTGACAACTTTATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGAGCTGGGAAGTTTGCCGCTGGAAAAAGTGGAGTGGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAACGGGCAAGGAGATCTTCTGAAGTTTTGGTTCTTCGCAAAAATAAAAAAGATGGTGTTAAAAAGTCCCACAAGTGCGACCTCGATGGTTGCCGAATGAGTTTCAAGACTAAGGCAGAGTTACTGTTGCATAAACGAAACCTTTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGTTCCCACAAATATGCTTTGCTTCACCAGCGAGTTCATGATGATGAGAGGCCCCTTAAGTGTCCATGGAAAGGTTGTTCCATGTCGTTCAAGTGGGCTTGGGCAAGGACAGAGCACATACGCGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTGGAGGGATGCGGCCTTTCATTCAGGTTTGTATCTGATTTTAGCAGACACAGACGGAAAACGGGACACCATGTGAAACCTCCTGCTTGA 4683 0.4083 MGSVEIPNWLKELPLAPEFRPTDTEFADPIAYISKIEKQASNFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDLSPDNSSLGVCNSLKFGSGDGSSDGVSRAVFTTRHQELGQTQSVKKAKGTVQNPQSGVHKQVWQSGEVYTLEQFESKSKSFARSLLGSVKDVSPLVIESMFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRLRKRTYYKSRLDSSDCKQTVMGCGRDTQIDDTKGASVQSDADKCLRMTKSVDTVSTFSSNDDSQPFKEKSSDTGNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYGGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLSVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMVQENKLLSILLGKEAAKRAVLWKAELLPDSSKGFQLPDLTSTTGTSVANMPNISSAKKSGHYLLDDEMSLYMDSLTNIDIGGDDLPYHFETDSGALACVGCGILGFPFMAVIQPTEKLTMELPDNHLIQVSSSDSTAGLHSSISRDLSFSELSSVKEMPDQSLNKCSKCWNTSSKFFRPRIFCLGHAVQIVDMLQSKGGANVLIICHSVSAKYGLLKYPGIPYILDDILAVASGFHDFSQCAVDHTKDYQKIKAHASEVAVEIHSAFDYNEVPLDTASPENLTLIDLAVDGEELDECEDWTSTLGINLRNWVHTRNNAPSKQVPWTLGTLFHDKCPASNILALNWQSRRFRSKRSSHLAQTKSSHSIERKKDDRLGGRINDSTADKKLIQYSRRKFKSKHTCFPVANMVCELQEKSQKVSATLSANHDSCVSKTLQAEDLRTECALPCASACTEMSSMHPEIQIAEMPISTKMIAAKSQPSNSIPDHVLMIEKLGAEIESQTMQESYVDRNNDLTLSHSKMHHNTNVSEICGKESQDCQYKKCSSTLSNAPDGNIEMIKKTEIAEAVIIDSHCNRLTLDDQGHQEYQSNYKSNNEEAAVSTASMVNQSTLASVDGNVESPNNNHISERISSPIFLEKANEEGIDSISEMDKEPRINESPISKHTPNEVCEVRRELYASVDLQSNGILDDEQQVTQGGKNSKREITHVSTEQCCPSSGQCQIESVKKINEDPVCSYAAKGENKSVTSIELGCSEVSVEACPSKDSCMQFIPDKEKEMTNQSVNRIDEELFSGSDTSTKDSFLSVQECSKIENEIYVTENINEIKADLSQYKRGLESCELATEVPRLNSENKKKRKVERTGNRSNSDNFIRSPCEGLRPRAGKFAAGKSGVEINQVDKENQVAKRARRSSEVLVLRKNKKDGVKKSHKCDLDGCRMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPPA 1560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00863 1560 SMART c2h2final6 1445 1467 IPR013087 -
Vian3g00863 1560 SMART c2h2final6 1528 1554 IPR013087 -
Vian3g00863 1560 SMART c2h2final6 1468 1492 IPR013087 -
Vian3g00863 1560 SMART c2h2final6 1498 1522 IPR013087 -
Vian3g00863 1560 SUPERFAMILY Clavaminate synthase-like 294 460 - -
Vian3g00863 1560 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1494 - -
Vian3g00863 1560 MobiDBLite consensus disorder prediction 1367 1390 - -
Vian3g00863 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1508 1558 IPR036236 -
Vian3g00863 1560 SMART cupin_9 293 462 IPR003347 -
Vian3g00863 1560 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Vian3g00863 1560 FunFam Probable lysine-specific demethylase ELF6 1495 1524 - -
Vian3g00863 1560 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Vian3g00863 1560 Pfam jmjN domain 17 50 IPR003349 -
Vian3g00863 1560 MobiDBLite consensus disorder prediction 264 287 - -
Vian3g00863 1560 Gene3D Cupin 9 466 - -
Vian3g00863 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1528 1559 IPR013087 -
Vian3g00863 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1468 1497 IPR013087 -
Vian3g00863 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1470 1492 IPR013087 -
Vian3g00863 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1500 1522 IPR013087 -
Vian3g00863 1560 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Vian3g00863 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1530 1554 IPR013087 -
Vian3g00863 1560 MobiDBLite consensus disorder prediction 874 899 - -
Vian3g00863 1560 SMART JmjN_1 15 55 IPR003349 -
Vian3g00863 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1456 1505 IPR036236 -
Vian3g00863 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1498 1527 IPR013087 -
Vian3g00863 1560 MobiDBLite consensus disorder prediction 883 899 - -
Vian3g00863 1560 Gene3D Classic Zinc Finger 1465 1554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00863 Vian-Chr3 9252583 9262162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00863 1 948 C2H2 Transcription Factor Family AT5G04240 52.534 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g00863 JmjC 2.6e-36 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00863 3 9252583 9262162 Vian3g00863 3 9252583 9262162 ECH