Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00861 ATGGAATATTCCAATGGAAACCACACCAATGGCGATGCTTCATTCAACCTCTGCAATGGAGCCAGCGACCCACTCAACTGGGGCATGGCTGCAGAAGCTCTGAAAGGTAGCCACCTTGACGAGGTGAAGCGCATGGTGGAGGAGTACCGTAACTCCCTGGTCACGTTAGGTGGAAAGACCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCACCTGCCATGACCGCAGCGTGACGGTGGAGCTGGCGGGGGAGAGCCGGCGGGGAGTGAATGCCAGCAGTGATTGGGTGATTGATAGCATGAGCAGAGGCACTGATAGCTACGGGGTAACCACGGGCTTCGGTGCAACCTCACACAGGAGAACCAAGCAAGGTGGTGCCCTCCAAAACGAACTCATCAGATTTTTGAATGCCGGCATTTTTGGTAATGGCACAGAGGCTTCTCATACATTACCTTATTCATCTACAAGGGCAGCTATGTTGGTTAGGGTTAACACTTTGCTTCAAGGATATTCAGGCATTAGATTCGAAATTATGGAGGCTATTACCAAGTTTTTAAATCACAACATAACTCCATGTCTTCCACTACGTGGTACAATCACTGCATCAGGTGACTTGGTTCCTTTATCCTATGTTGCCGGTCTTTTAATTGGAAGATCAAACTCCAAGTCAATTGGACCCAATGGAGAAGTACTGAATGCTAAAGATGCCTTTAAATTAGCTGGAATTGATGGAGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTTGTCAATGGTACAGCAGTGGGATCTGGCTTGGCTTCCATTGTTCTTTTTGAGGCAAACTTACTTGTTGTTCTTTCTGAAGTTATGTCTGCAATCTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCACTTGACTCATAAATTGAAGCACCACCCTGGTCAAATCGAGGCTGCTGCTATAATGGAACACATACTAGATGGAAGCTCATACATTAAGGAAGCCCAAAAGTTACATGAGATTGATCCGCTTCAAAAGCCAAAACAAGATAGATATGCTCTTAGAACGTCTCCTCAATGGCTTGGACCACAAATTGAAGTAATCAGACATGCGACTAAGATGATTGAAAGGGAGATAAACTCTGTTAATGATAACCCCTTGATCGATGTTTCAAGGAACAAGGCACTTCATGGGGGCAATTTCCAAGGTACTCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCGATCGGGAAGCTCATGTTTGCCCAATTCTCTGAACTTGTGAATGACTTGTACAATAATGGTTTACCTTCAAATCTAACAGCCGGTCGCAATCCAAGCTTAGATTATGGATTCAAAGGTGCTGAAATAGCAATGGCATCATACTGTTCAGAACTTCAGTATCTGGCCAACCCTGTGACTAATCATGTGCAGAGTGCTGAGCAACATAACCAAGATGTCAATTCCTTAGGCTTGGTTTCCTCAAGAAAGACTGCTGAAGCTGTAGAAATATTAAAGCTCATGTCTTCCACTTACTTAGTTGCATTGTGTCAAGCCATTGACTTGAGACATTTGGAAGAAAACATGAAGAACGCAGTTAAGAATGCTGTGAGTCAAGTGGCCAAAAGAGTTCTCACAACTGGGATCAATGGTGAGTTACATCCTTCTAGATTCTGTGAGAAGGACTTGCTTAAAGTTGTTGATCATGAATATGTCTTTGCTTACATTGATGACCCCTGTAGTATAACCTACCCTTTGATGCAAAAGTTGAGATCAGTTCTGGTTGATCATGCATTGCAAAACGGTGAGAAAGAGGGAAATTCAAGTAGCTCGATTTTCCATAAGATAAGAGGCTTTGAGGAAGAACTGATAGCCCTTTTGCCGAAGGAGGTAGAAAATGCAAGGATTGAAGCTGAGAATGGAAATTCAAATATTCCTAACAGAATTAAAGAATGCAGATCTTACCCATTATATAAGTTTGTGAGAGAAAGCTTGGGTACAAGTTTGCTAACAGGGGAGAAGGTGAAGTCACCTGGTGAGGAATGTGACAAGGTTTTTACTGCATTATGTGAAGGAAAGTTTATTGATTCTATGCTCGATTGTCTAAAGAACTGGAATGGTTCTCCTCTACCAATATGCTAA 2148 0.4339 MEYSNGNHTNGDASFNLCNGASDPLNWGMAAEALKGSHLDEVKRMVEEYRNSLVTLGGKTLTVSQVAAVATCHDRSVTVELAGESRRGVNASSDWVIDSMSRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTEASHTLPYSSTRAAMLVRVNTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRSNSKSIGPNGEVLNAKDAFKLAGIDGGFFELQPKEGLALVNGTAVGSGLASIVLFEANLLVVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKEAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDLYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLVSSRKTAEAVEILKLMSSTYLVALCQAIDLRHLEENMKNAVKNAVSQVAKRVLTTGINGELHPSRFCEKDLLKVVDHEYVFAYIDDPCSITYPLMQKLRSVLVDHALQNGEKEGNSSSSIFHKIRGFEEELIALLPKEVENARIEAENGNSNIPNRIKECRSYPLYKFVRESLGTSLLTGEKVKSPGEECDKVFTALCEGKFIDSMLDCLKNWNGSPLPIC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00861 715 Gene3D - 528 649 IPR023144 -
Vian3g00861 715 Pfam Aromatic amino acid lyase 61 541 IPR001106 -
Vian3g00861 715 SUPERFAMILY L-aspartase-like 23 715 IPR008948 GO:0003824
Vian3g00861 715 FunFam Phenylalanine ammonia-lyase 14 261 - -
Vian3g00861 715 Gene3D Fumarase/aspartase (Central domain) 262 709 - -
Vian3g00861 715 NCBIfam phenylalanine ammonia-lyase 23 705 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vian3g00861 715 PANTHER HISTIDINE AMMONIA-LYASE 15 715 IPR001106 -
Vian3g00861 715 FunFam Phenylalanine ammonia-lyase 528 649 - -
Vian3g00861 715 CDD PAL-HAL 59 525 IPR001106 -
Vian3g00861 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Vian3g00861 715 Gene3D - 15 261 IPR024083 -
Vian3g00861 715 FunFam Phenylalanine ammonia-lyase 262 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00861 Vian-Chr3 9220762 9225263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00861 16 715 Monolignol Biosynthesis Gene Families AT2G37040 80.714 0.0 1197