Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00860 ATGGGATTTTCAAAGGATAATGGTTACAGTAACAGTGACCCACTTAACTGGGGCATGGCTGCGGATGCTTTGAGAGGTAGCCACCTTGAGGAGGTGAAGCGCATGGTGGAAGAATACCGTAACCCCGTGGTGACGGTAGGTGGGAAGGGCCTCACCGTGTCTCAGGTGGCGGCGGTTGCTATCGGCGGCATAAGGGTGGAGCTGGCGGAGGAAACCCGGCATGGTGTAAATGACAGCAGTGATTGGGTGACTAAAAGTTTGGTGAACGGCGTTGATACTTATGGGATCACCACAGGCTTCGGTGGAACCTCCTACAGGAGAACCAACCAAGGTGTTGCTCTCCAAAACGAACTCATCAGATTTTTAAATGCTGGAATTTTTGGCAATGATAAGGAATCTTGTCACACTTTACCTCAATCAACTACAAGAGCATCCATGTTGGTTAGGATTAACACCTTGCTTCAAGGATATTCAGGCATAAGATTTGAAATCATGGAGGCCATAGCCAAGTTTTTGAACCATAACATAACTCCTTGTCTCCCACTACGTGGCTCAATCACTGCATCAGGTGATATAATTCCTTTCTCATATGTTGTTAGTCTCTTGATTGGTAGGACAAACTCCAAGTCTATTGGACCTAATGGAGAAGTTCTTAATGCTAGAGAGGCCTTTCAATTAGCAGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAAGGATTAGCATTAGTAAATGGAACCACAGTTGGATCTGGCTTAGCTTCTATAGTTCTTTTTGAAGCAAACTTACTTGTCATCCTCTCAGAAGTCTTGGTTGCAATTTTTGTTGAAGTTATGCATGGAAAACCAGAATTCACAAATCACTTAATTCATAAATTGAAGCACCACCCTGGCCAAATCGAGGCTGCAGCCATAATGGAGCATATATTGGATGGAAGTTCATTTATTAAGGAAGCACAAAAGTTTAATGAAATTGACCCGCTTCAAAAGCTTAAACAAGACAGGTATGCTCTCAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATCAGGCATGCAACAAAGATGATTGAAAGGGAGATAAACTCTGTAAATGATAACCCCTTGATTGACGCTTCAAGGAATAAGGCACTTCATTGTGGAAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACTCGTTTGGCCATAGCATCAATTGGAAAACTGTTGTTTGCCCAATTCACTGAACTTGTGAATGACTTATACAATAATGGTTTACCTTCAAGTTTAGCTGCTAGTCCCAACCCAAGCTTGGATTATGGCCTCAAAGGATCAGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACTTGGCAAATCCTGTCACAACTCATGTGCAGAGTACGGAGCAACATAACCAAGGGGTAAACTCGTTAGGCTTAATTTCTGCAAGAAAGACAGCTGAAGCATTAGACATCTTAAAGCTCATGGCTTCCACTTTTTTAGTTGCATTATGTCAAGCAATTGATCTACGACATCTAGCAGAAAACTTGAAGAACATTGTGAAGAATATTGTGAGTCAAGTGGCAAAAAAAGTTCTCACAATTGACATTAATCATGAGGACTTGCTTAAAATTGTTGATGGTGAGCATGTTTTTGCTTATATTGATGATCCTTGTAGGACAACACATCCTCTGATGCAAAAGTTGAGGTTAGTCCTAATTGATCATGCATTACAAAATGGTGACAAAGTGACAAGTTCAAGCTCTTCAATCTTTCAAAAGATAAGTGCTTTTGAGGAAGAACTCAAAGTAATTTTGCCAAAGGAGGTGGAAAGTACTAGGGTTGAAATTGAGAATGGAAATCCAGTTATTCCTAATCGAATTAGGAAATGTAGATCTTACTCAATGTATAAGTTTGTGAGAGACACTTTGGGCACAACTTTACTAACAGGCGAAAAAGTGACATCACCTGGTGAAGAATGCGATAAGGTATTTATTGCATTGTGTGAAGGAAAATTTATTGATCCTATGTTGAATTGTCTAAAAGAGTGGAATGGAACACCTTTACCAATATGA 2079 0.404 MGFSKDNGYSNSDPLNWGMAADALRGSHLEEVKRMVEEYRNPVVTVGGKGLTVSQVAAVAIGGIRVELAEETRHGVNDSSDWVTKSLVNGVDTYGITTGFGGTSYRRTNQGVALQNELIRFLNAGIFGNDKESCHTLPQSTTRASMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGSITASGDIIPFSYVVSLLIGRTNSKSIGPNGEVLNAREAFQLAGIDGGFFELQPKEGLALVNGTTVGSGLASIVLFEANLLVILSEVLVAIFVEVMHGKPEFTNHLIHKLKHHPGQIEAAAIMEHILDGSSFIKEAQKFNEIDPLQKLKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDASRNKALHCGNFQGTPIGVSMDNTRLAIASIGKLLFAQFTELVNDLYNNGLPSSLAASPNPSLDYGLKGSEIAMASYCSELQYLANPVTTHVQSTEQHNQGVNSLGLISARKTAEALDILKLMASTFLVALCQAIDLRHLAENLKNIVKNIVSQVAKKVLTIDINHEDLLKIVDGEHVFAYIDDPCRTTHPLMQKLRLVLIDHALQNGDKVTSSSSSIFQKISAFEEELKVILPKEVESTRVEIENGNPVIPNRIRKCRSYSMYKFVRDTLGTTLLTGEKVTSPGEECDKVFIALCEGKFIDPMLNCLKEWNGTPLPI 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00860 692 Gene3D - 4 248 IPR024083 -
Vian3g00860 692 NCBIfam phenylalanine ammonia-lyase 13 683 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vian3g00860 692 FunFam Phenylalanine ammonia-lyase 4 248 - -
Vian3g00860 692 CDD PAL-HAL 49 512 IPR001106 -
Vian3g00860 692 Gene3D Fumarase/aspartase (Central domain) 250 687 - -
Vian3g00860 692 SUPERFAMILY L-aspartase-like 13 692 IPR008948 GO:0003824
Vian3g00860 692 Pfam Aromatic amino acid lyase 51 526 IPR001106 -
Vian3g00860 692 Gene3D - 515 627 IPR023144 -
Vian3g00860 692 PANTHER HISTIDINE AMMONIA-LYASE 11 692 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00860 Vian-Chr3 9213488 9217616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00860 12 692 Monolignol Biosynthesis Gene Families AT3G53260 73.121 0.0 1082
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02046 3 26093421 26097419 Vian3g00860 3 9213488 9217616 ECH
Vian3g00860 3 9213488 9217616 Vian3g00860 3 9213488 9217616 ECH