Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00859 ATGTTGGTTAGGATCAACACTTTGCTTCAAGGATATTCAGGCATAAGATTTGAAATCATGGAGGTCATAGCCAAGTTTTTGAATCATAACATAACTCCCTGTCTCCCACTACGTGGCTCAATCACTGCATCAGGTGATATAATTCCTTTATCATATGTTGTTAGTCTCTTGATTGGTAGGACAAACTCCAAGTCTATTGGACCTAATGGAGAAGTTCTTAATGCTAGAGAGGCCTTTCAATTAGCAGGAATTAATGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTAGCATTAGTAAATGGAACTGCAGTTGGATCTGGCTTAGCTTCCACAGTTCTTTTTGAAGCAAACTTACTTGTCATCCTCTCAGAAGTCTTGGTTGCAATTTTTATTGAAGTTATGCAGGGAAAACCAGAAGTCACAGATCACTTAATTCATAAATTGAAGCACCATCCTGGCCAAATCGAGGTTGCTGCTATAATGGAACACATACTAGACGGAAGCTCATACATTAAGGAAGCCCAAAAGTTACATGAAATTGATCCACTTCAAAAGCCAAGACAAGATAGGTATGCTATTAGAACGTCTCCTCAATGGCTTGGACCACAAATTGAAGTAATCAGACATGCAACTAAGATGATTGAAAGGGAGATAAACTCTGTAAATGATAACCCGTTGATTGATGTTTCAAGGAATAAGGCACTTCATGGTGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACTCGTTTGGCCATAGCAGCAATTGGAAAACTTATGTTTGCCCAATTCACTGAACTTGTGAATGACTTATATAATAATGGTTTGCCTTTAAGTTTAGCTGCTAGTCACAACCTAAGCTTGGATTATGGCTTCAAAGGAGCAGAAGTTGCAATGGCATCCTACTGTTCAGAACTTCAATACCTGGCAAATCCTGTCACAACTCATATGCAGAGTGCGGAGCAACATAACCAAGGGGTGAACTCGTTAGGCTTAATTTCTGCAAGAAAGACAGCTGAAGCATTAGACATCTTAAAGCTCATGGCTTCCACTTTTTTAGTTGCATTATGTCAAGCAATTGATCTACGACATCTGGAGGAAAACTTGAAGAACACTGTGAAGAATATTGTGAGTGAAGTGGCAAAAAAAGTTCTCACAATTGACATTAATCATGACGACTTGCTTAAAATTGTTGATGGTGAGCATGTGTTTGCTTATATTGATGATCCTTGTAGGACAACATATCCTCTGATGCAAAAGTTGAGGTTAGTCCTAATTGATCATGCATTACAAAATGGTGACAAAGTGCCAAGTTCAAGTTCTTCAATCTTTCAAAAGATAAGTGCTTTTGAGGAAGAACTCAAAGTACTTTTGCCAAAGGAGGTGGAAAGTACTAGGATTGAAATTGAGAATGGAAATTCAGTTATTCCTAATCGAATTAGGAAATGTAGATCTTACTCAATATATAAGTTTGTGAGAGACACTTTGGACACAACTTTACTATCAGGGGAAAAAATGACATCACCTGGTGAAGAATGTAACAAGGTATTTGTTGCATTGTGTGAAAGAAAATTTATTGATCCTATGTTGAATTGTCTAAAAGAATGGAATGGAACACCTTTACCAATAGGATAA 1647 0.377 MLVRINTLLQGYSGIRFEIMEVIAKFLNHNITPCLPLRGSITASGDIIPLSYVVSLLIGRTNSKSIGPNGEVLNAREAFQLAGINGGFFELQPKEGLALVNGTAVGSGLASTVLFEANLLVILSEVLVAIFIEVMQGKPEVTDHLIHKLKHHPGQIEVAAIMEHILDGSSYIKEAQKLHEIDPLQKPRQDRYAIRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFTELVNDLYNNGLPLSLAASHNLSLDYGFKGAEVAMASYCSELQYLANPVTTHMQSAEQHNQGVNSLGLISARKTAEALDILKLMASTFLVALCQAIDLRHLEENLKNTVKNIVSEVAKKVLTIDINHDDLLKIVDGEHVFAYIDDPCRTTYPLMQKLRLVLIDHALQNGDKVPSSSSSIFQKISAFEEELKVLLPKEVESTRIEIENGNSVIPNRIRKCRSYSIYKFVRDTLDTTLLSGEKMTSPGEECNKVFVALCERKFIDPMLNCLKEWNGTPLPIG 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00859 548 Gene3D - 1 103 IPR024083 -
Vian3g00859 548 PANTHER HISTIDINE AMMONIA-LYASE 1 547 IPR001106 -
Vian3g00859 548 Gene3D Fumarase/aspartase (Central domain) 104 542 - -
Vian3g00859 548 CDD PAL-HAL 1 367 IPR001106 -
Vian3g00859 548 Pfam Aromatic amino acid lyase 1 382 IPR001106 -
Vian3g00859 548 Gene3D - 370 482 IPR023144 -
Vian3g00859 548 NCBIfam phenylalanine ammonia-lyase 1 538 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vian3g00859 548 SUPERFAMILY L-aspartase-like 1 547 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00859 Vian-Chr3 9183418 9185064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00859 1 547 Monolignol Biosynthesis Gene Families AT2G37040 75.000 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00859 K10775 - gmx:100801470 927.546