Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00852 ATGGTCAAGCAATCACACGTGGCAGGTTCGCGTTGGGTGGAGTGGAGCGAGGTGACGAATGAAAATAAGCAATGGCAAGGTCACGTGAGGGAAGTCCCCACGTCACGTGGTGTTGCTGGAATTGAGTGGGTGGGGTCCATGGTAACTGGGATAGTCCATATTCGCCACGTTGATGAACGTGTGGACCGAACTTTCGAACATGCAACGCGGGACCCACGCAGCATGGGAGGGAATTTTCCACCTGCCGAGAAAATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGTAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCTGTGGAGGAAGTTGAGGGAATCACCCCAACCTTGCCCGCCGCCGCCGCCGCCGCCGCCGGAAACTGCAACTCGTTGGCAAGCATCTGGCCCGCCGGGGCGGATTCGTTTCCCGGTTCTGACTCGGTGTTCTCCGGCAACAGCGCTTCGGACCTCTCCGCCGAGCTCTCAGTTCCGTATGAAGACATTGTGCAATTGGAATGGCTGTCGAACTTTGTGGAGGATTCGTTTTGTGGGGGGAGCTTGACCATGAAAAAAGTGGAAGAGCCATCGTGCATCACAAAGGAGGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTCCTTGAGAGCAGCAGTTCCTGCTCCGGGGGAAAGACGGTGCCGCCGCCGCCACGAAGTCCGGAGGTTTACATCCCTGTGCCATGTGGACGCGCACGCAGCAAGCGTCCACGTCCTGCTACCTTCAATCCTCGGCCAGCCATGAACCTCATTTCCCCTGCCTCGTCCTTTGTCGGGGAGAACATACAACCAAATGTAATTTCGCCGAAGACCTCTTCAGACTCTGAGAATTTTGCCGAGTCTCAACTTGTAGCAAAGATGCCAAAGCAAGTGTGTGGGGAGCCTAAGAAAAAGAAGAAAGTGAAGGTGACAGTTCCTGCAGGTGGCGGTGATAGCAATCAGAATGGATTGCAAGCGGTTAGGAAATGCATGCATTGTGAAATAACGAAGACACCACAGTGGAGAGCAGGGCCAATGGGGCCAAAAACACTGTGCAATGCATGTGGTGTTCGTTTCAAGTCTGGGAGGCTCTACCCGGAGTATCGCCCAGCTGCAAGCCCAACCTTTTGTCCATCTTTGCACTCGAATTCCCACAAGAAGGTGCTGGAAATGAGATGCAGGGGCATTGAGAAATCTGGTTTTGCGATGAATAATGTAGCTGCCTCTCCCGAACTCATTCCAAACACTAACAGCAGCCTTAGCCTGGAGTACATTTGA 1314 0.532 MVKQSHVAGSRWVEWSEVTNENKQWQGHVREVPTSRGVAGIEWVGSMVTGIVHIRHVDERVDRTFEHATRDPRSMGGNFPPAEKMVGPNFMDEIDCGSFFDHIDDLLDFPVEEVEGITPTLPAAAAAAAGNCNSLASIWPAGADSFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVEEPSCITKEDSVHNQFHTSSPVSVLESSSSCSGGKTVPPPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENIQPNVISPKTSSDSENFAESQLVAKMPKQVCGEPKKKKKVKVTVPAGGGDSNQNGLQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLYPEYRPAASPTFCPSLHSNSHKKVLEMRCRGIEKSGFAMNNVAASPELIPNTNSSLSLEYI 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00852 437 Gene3D - 337 386 IPR013088 GO:0006355|GO:0008270
Vian3g00852 437 MobiDBLite consensus disorder prediction 221 266 - -
Vian3g00852 437 SMART GATA_3 336 386 IPR000679 GO:0006355|GO:0043565
Vian3g00852 437 FunFam GATA transcription factor 331 417 - -
Vian3g00852 437 Pfam GATA zinc finger 342 375 IPR000679 GO:0006355|GO:0043565
Vian3g00852 437 CDD ZnF_GATA 341 388 IPR000679 GO:0006355|GO:0043565
Vian3g00852 437 ProSiteProfiles GATA-type zinc finger domain profile. 336 372 IPR000679 GO:0006355|GO:0043565
Vian3g00852 437 ProSitePatterns GATA-type zinc finger domain. 342 367 IPR000679 GO:0006355|GO:0043565
Vian3g00852 437 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 340 399 - -
Vian3g00852 437 PANTHER GATA TRANSCRIPTION FACTOR 91 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00852 Vian-Chr3 9075110 9087116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00852 103 404 C2C2-Gata Transcription Factor Family AT4G32890 36.774 7.34e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian3g00852 GATA 1.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00852 - - gmx:100815693 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00852 3 9075110 9087116 Vian3g00852 3 9075110 9087116 ECH