Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00837 ATGACGGGTTATTCTTCAAGATTCTATCTTGTTTTGCTTTTGTCCATTTGTGGAGTGGTTTCTTTGGCTTCCCCCATTGAAGATCAGAAGAGAGATAGAATTACCCAACTGCCAGGACAGCCAAAGAATGTGGGGTTTGCTCAGTATTCTGGCTACGTGACTGTGAATGAGCAAAGTGGGAGAGCACTGTTTTACTGGTTGGTGGAGGCACCAGTGAGTCGTCGACCAAAGTCAAGGCCACTAGTTTTGTGGCTCAATGGTGGCCCCGGTTGTTCCTCTATTGCTTATGGGGCATCTGAAGAAATTGGTCCTTTTCACATTAGGCCTGATGGAAGGTCGCTTTACTCGAACCCTTATGCTTGGAACAAGTTGGCAAATATACTGTTCCTCGATTCCCCTGCTGGTGTTGGTTTTTCATATTCGAATAAAACAACAGATCTGTATACATTTGGTGACCAGAAAACAGCTGAAGATGCATATGCTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGAGAGAGTTATGCAGGTCACTACGTTCCCCAGTTGGGTCAAATTGTTTACCAGAAAAATAAGGGAATCCAGAATCCAGTCATAAATTTTAAGGGTTTTATGGTTGGTAATGCTGTTACTGATGACTATCATGATTATGTTGGCACATTTGAATATTGGTGGACCCATGGTTTGGTTTCAGATTCCACGTATAGGATGCTAAAAATTGCGTGCAATTTTGGGTCCTCTCAGCATCCATCAGTGCAATGCATGCAGGCTCTGAGACTTGCATCTTTGGAGCAGGGAAACATTGATCCATACAGCGTTTACACTCAGCCTTGTAACAACACAGCATCACTCAGACGCGGCTTGAAGGGTCGCTATCCATGGATGTCTCGAGCATATGATCCCTGTACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCATTTCATGCCAATGTAACTGGGATTCCTTATGCATGGAAAGCATGCGGTGATATTGTTGGGAACTATTGGACTGATTCTCCATTATCTATGCTTCCTATATATCAAGAACTTATTAGTGCTGGTGTCCGAATATGGGTTTACAGTGGAGACACTGATGCGGTGGTTCCAGTGACTGCTACTCGATATTCAATTGATGCCTTGAAGCTACCTACCATCATCAATTGGTACCCTTGGTATGACAGTGGCAAGGTTGGTGGTTGGAGTCAAGTTTATAAAGGGTTGACAATGGTTACAGTAAGAGGTGCTGGACACGAGGTTCCTCTTCATAGGCCCCGACAAGCATTCATTCTTTTTAGTTCATTCTTGCAGAACAAGTCGATGCCAACAACAAGTTAG 1383 0.4309 MTGYSSRFYLVLLLSICGVVSLASPIEDQKRDRITQLPGQPKNVGFAQYSGYVTVNEQSGRALFYWLVEAPVSRRPKSRPLVLWLNGGPGCSSIAYGASEEIGPFHIRPDGRSLYSNPYAWNKLANILFLDSPAGVGFSYSNKTTDLYTFGDQKTAEDAYAFLVNWFERFPQYKHREFYIAGESYAGHYVPQLGQIVYQKNKGIQNPVINFKGFMVGNAVTDDYHDYVGTFEYWWTHGLVSDSTYRMLKIACNFGSSQHPSVQCMQALRLASLEQGNIDPYSVYTQPCNNTASLRRGLKGRYPWMSRAYDPCTERYSDLYFNRPEVQKAFHANVTGIPYAWKACGDIVGNYWTDSPLSMLPIYQELISAGVRIWVYSGDTDAVVPVTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTMVTVRGAGHEVPLHRPRQAFILFSSFLQNKSMPTTS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00837 460 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Vian3g00837 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Vian3g00837 460 FunFam Carboxypeptidase 28 290 - -
Vian3g00837 460 SUPERFAMILY alpha/beta-Hydrolases 29 457 IPR029058 -
Vian3g00837 460 Gene3D - 359 453 - -
Vian3g00837 460 FunFam Carboxypeptidase 359 453 - -
Vian3g00837 460 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Vian3g00837 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vian3g00837 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vian3g00837 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vian3g00837 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Vian3g00837 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 440 IPR001563 GO:0004185|GO:0006508
Vian3g00837 460 FunFam Carboxypeptidase 309 456 - -
Vian3g00837 460 Pfam Serine carboxypeptidase 38 453 IPR001563 GO:0004185|GO:0006508
Vian3g00837 460 Gene3D - 312 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00837 Vian-Chr3 8822203 8825459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00837 341 456 Calmodulin-binding Proteins AT2G22960 29.060 2.07e-12 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00837 3 8822203 8825459 Vian3g00837 3 8822203 8825459 ECH