Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00836 ATGCCGCCTGAACCATTGCCTTGGGATCGAAAGGACTTCTTCAAGGAGAGGAAGCACGAGAGGTCTGAGTCACTTGGGTCAGTCGCCAGATGGAGGGATTCCTCGCACCACCGCGACTTCAATCGCTGGGGATCCGCCGAGTTTCGCAGACCGCCAGGGCATGGTAAGCAGGGCGGTTGGCACCTGTTTTCTGAGGACTCAGGTCATGGGTATGCAATTTCTCGGTCAAGCAGTGACAAGATCCTGGAGGAAGATAGTCGGCCCTCGATTTCACGAGGTGATGGGAAGTACGGCAGGAGCAGCAGGGAAAATAGAGGACCCTTTGGTCAGAGAGATTGGAGAGGGCATTCGTGGGAACCCTCCAATGGTACCGTGAATTTACCCAGAAGGCCGCAGGATATGAACAATGATCAGAGGGCTGTGGACGACGCCCTAGGATACTCTTCTCATCCACATTCCGATTTCGTGAACTCTTGGGATCCGCATCATCTTAAAGACCAGCATGAGAAGATAGGTAGTGTCAATGGGTTGGGAACTGGCTCCAGAAGTGACAGAGAGAACTCTCTGGGTGACTGGAAGCCGCTTAAATGGACCCGTTCTGGAAGCTTGTCTTCTCGAGGCTCGGGTTTTAGCCACTCAAGTAGCTCAAGGAGCATGGGAGCAGCGGATTCGCTTGAAGAGAAGGCTGAGTTGCAACAGAAAAGTGCAGCTGCTAATGAGTCACATTCAGGGGAAGCCGCTGCTTGTGCGACATCTTCTGTGCCATCTGAAGATACGGCTTCTAGAAAAAAGCCAAGGCTGAATTGGGGCGAGGGACTTGCAAAGTATGAGAAGAAAAAAGTCGAGGTGCCTGATGCAAGTGCAAACAAAGATGGTCCTGTCTTGTCTGCTAGTATCACCGAACCTTGTAATTTCCTCAGTACCAGCTTGGTTGACAAAAGTCCAAAAGTTACAGGATTTTCTGAATGTGCATCTCCTGCAACTCCATCTTCTGTCGCCTGCAGTTCCTCTCCTGGTATGGATGATAAATTATTTGGAAAGACTACAAATGTAGACAATGATGTTAGTAATTTGACTTGTTCACCCGCCCCTTTGTCGGAAAATAATTTGCAGAGGTTTTCCTTTAACTTAGAGAAATTTGATATGGGCTCCTTGAATAATTTGGGTTCTTCAATTATTGAGCTGGTACAATCTGATGATCCAACTTCTGTAGATTCTGGTCCAATGAGGTCCAATGCAATTAATAAGTTACTGATATGGAAAGCTGACATTTCAAAGGTGTTGGAGAAGACCGAATCTGAAATAGATTTACTTGAAAATGAACTGAAGTTGCTGAAATCTGAATCTGGTGTTACATGTCCATTTGCGGTATCCCTGGGCTCCCAGATGGTAGGTAGTGGTGAAAAATCCTTTGAAGGACATGTTGGAGTCTCTGATCAGGTCACCCGGCCGGTACCGTTGAATATTGTTGATGATGCCAATACAGAGAAAGTGCCATTCTCAACTAATTTACACAGTGTTCATGAAAATGTAAAGGAAGAGGATATTGATAGTCCTGGAACAGCTACTTCTAAATTTGTTGAGCCTCTGCCTGTTTCTTGTGGTACTGGAGGAGGATATGTTAATTTCTCCCAGGACTTGGATTCTGTTCCATCTGCAGCTGTGAAATACTTAATTCCCTGTACTGCTAGGAAAGATGTTATTGTACCTTGTGTTGATGGCAAGACTTCTTTGGAGGTAAATGATAGCATGGATATTTTATGTGGTACAATTATTTCTTCCAATAAAGAATGTGCCAACAAAGCTAGTGAGGTGTTTGATAATTTATTGCCCAAAGATTGTTGTAAGATTGGGAGGATGGGAACCAGCAGTGACACATGCAATCAGACCTTGATTAGGGAAAAGTTTGTTGAGAAAAAGCGACTTGCTAGGTTTAAGGAGAGAGTTATTGCACTTAAGTTCAGAGCTTTGCATCACTTGTGGAAAGAAGATATGCGTTTACTTTCTATCAGGAAATGCCGACCAAAATCTCACAAAAAGAATGAACTAAGTGTTCGAACTACCTGTAATGGTAACCAGAAGAACCGATCATCCATTCGATCACGTTTTCCCTTTCCTGCAGGAAATCATCTGAGCTTGGTTCCAACATCAGAGATTATTAATTTTACAAGCAAACTGCTTTCAGAATCTCAAGTTAAAGTGCAGAGGAACACTTTGAAGATGCCGGCATTAATTTTGGATGAAAAAGAGAAGACGATTTCAAAGTTTGTAACTAGTAATGGGCTGGTTGAAGATCCATTGGCTATTGAGAAGGAAAGGTCTTTGATTAATCCTTGGACACCACAAGAGAGAGAAATTTTCTTGGAGAAATTTGCTGTCTTTGGAAAAAATTTTAGGAAAATTGCTTCTTTTCTTGACCACAAGACAACTGCTGACTGTGTTGAATTCTACTACAAAAATCATAAATCTGATTGTTTTGAGAAACTTAAGAAGCAAGATGTTGGTAAGCTGGGGAAGACATATTCAGCTAAAACTGACTTGGTGGCATCAGGTAAAAAATGGAATCGTGAATTGAATGCTGCTTCCCTTGAAATTTTGAGTGCAGCTTCGCTGATGGCAGGTGGCATTGCAGGTAATAAAAAAATCCGTGCAGGAAGCTCACTTTTGGGTGGATATGGTAAAGTAAAGACGTCGAGGGTTGAAGACTTCATTGAGAAATCAGGCAGTTTTGACATTCTTGGGGATGAAAGAGAGACTGCTGCTGCAGCTGATGTATTGGCAGGTATATGTGGTTCTCTTTCATCCGAGGCTATTGGTTCCTGCATAACAAGTTCTGTCGATGCAGTAGAAGGTAGCAGGGATAGGAAGTTCCTGAAAGTAAACCCTTTATACAAGCTGCCCTTGACACCAGATGTAACTCAGGATGTTGATGATGAGACTTGTTCGGATGAGAGCTGTGGTGAAATGGATGCTACAGACTGGACTGATGATGAGAAGGCTGCCTTTCTTCAGGCTGTATCTTCTTTTGGGAAAGATTTTGCCAAAATAGCTCGATGTGTTGGGACAAGGTCCCAAGAACAGTGCAAAGTTTTCTTCAGCAAAGGCCGCAAATGTCTTGGATTAGATCTCATGCGCCCAATACCTGAAAATGTTGGATCCCCAGTGAACGATGATGCAAATGGGGGTGAGAGTGACACTGATGATGCATGTGTCGTGGAGACAGGCTCAATGGTTGAAACTGAAAAGTCTGGCACTAAAACAGATGAGGACCTGCCTTTTTATGGAACAAAAACATTCAATGACGATTCCAATCCTGTGCAAGCTAGGAACATGTCTGCAGAATTAGATGAATCAAAGGGGACTGATGGGACTGAAGTAGATATTGAAGATGCAAATGTGGTTTCTGATGCATGTGCAATTGATATTGATTCTAAACTGGGCTGTGATGTTAGTAAATTTGCCTTGTGTGGTTCTGTCAGTGGACAAACAACTGTAATCATGTCGAATAGCACAGAAATTAGAAGAGATAAAGCTAATAAATTGAAATCTGTTCCAGATACAAGTAGTGAACCATGCGAGATTAATTCTTTTGTTGAGGATAGAATGGTGGTTTCCGAGGTGTCTTCGGGAAGACCTGGTAATGAATTGGAGAGGCAGAGAGTGTCTTCACCCCGATGTCATGATGATAGAGATAGTAAACAAGAAGCTGATTCGGGTGTCATAGTTGATTTGAAAAGCCCTGTGCACATTCTAAGCACTATGGTAAATGCTCCCGTCTCGTCATTTGGAAATTCCTGTTCAGGATTGACTTCTAGTACTGAAAATAAGCACGTAGCCATTGGACAGCCTCATACCTCCCCGTTGTCTGTGGACGAACATCAAGCATCTTCAAATTCATTTTTACAAAATACTGTTGCTTCTGATATTCAGTGTGAGAAAACAGCTAGCCAAGATAGACTATCTTCTACCTGTGATATTCAGGTTAGCACGGATGAGCAGCCCCCTATTACTGGGATTTCATCAGACCATGTTGATACCGGAAGTATTCTCCAGGGCTATCCCATGCAAGCTCCCATTAAGAAGGAGATGAATGATGATATGAACTGTAGCAGTTCAGCAGCAGAATTGCATCTTTTGTCCCAGAAGATTGAACAGCCTGATGATCAAACCAAAAAATTACAGTCGTTGGATTCAGATAAAACATCCAGAAATGGTGATGTCAAACTTTTTGGGAAGATACTAACCAATCCTTCATCAGCACAAAAACATAATGTGGGTGCTAAAGGTAGTGAAGAAAATGGTACCCACAGTCATAAGTTCAGCAAACCTTCTGGTGTGAAATTTACCGGACATAATGCAGATGGGAATTTGAAAATTTTGAAGTTTGACTGTAATGATTATGTTGGCCTTGAAAATGTTCCCATGAGGAGTTATGGTTATTGGGATGGGAACAGAATACAGACTGGACTCTCTTCTTTGCCAGATTCTGCTATCTTGCTAGCAAAGTATCCTGCAGCCTTCAGTAATTATCCCACCACACCTTCTGCCAAATTGGAGCAACCGTCATTGCAAACATTTTCCAAGAATAATAATGAACAGCTCCTAAATGGCAGTAATGCTGCCGTGATTGATTATCAGATGTTTAGAAGGGATGGTCCGAAAGTGCAGCCATTTATGGTAGATGTGAAGCACTGCCAGGATGTATTCTCTGAGATGCAGAGAAGAAATGGTTTTGAAGCAATCTCAAGTTTACAGCAGCAGAGCAGGGGAGTGATGGGAATGAATGGGGTTGGAAGACCGGGGATTCTTGTGGGAGGATCGTGCAGTGGTGTCTCAGATCCTGTGGCAGCAATCAAAATGCATTATTCCAATTCTGACAAGTATGGTGGTCAGTCTGGGAGTATTGCGAGAGAAGATGAATCATGGGGAGGGAAGGGGGACTGA 4944 0.4306 MPPEPLPWDRKDFFKERKHERSESLGSVARWRDSSHHRDFNRWGSAEFRRPPGHGKQGGWHLFSEDSGHGYAISRSSSDKILEEDSRPSISRGDGKYGRSSRENRGPFGQRDWRGHSWEPSNGTVNLPRRPQDMNNDQRAVDDALGYSSHPHSDFVNSWDPHHLKDQHEKIGSVNGLGTGSRSDRENSLGDWKPLKWTRSGSLSSRGSGFSHSSSSRSMGAADSLEEKAELQQKSAAANESHSGEAAACATSSVPSEDTASRKKPRLNWGEGLAKYEKKKVEVPDASANKDGPVLSASITEPCNFLSTSLVDKSPKVTGFSECASPATPSSVACSSSPGMDDKLFGKTTNVDNDVSNLTCSPAPLSENNLQRFSFNLEKFDMGSLNNLGSSIIELVQSDDPTSVDSGPMRSNAINKLLIWKADISKVLEKTESEIDLLENELKLLKSESGVTCPFAVSLGSQMVGSGEKSFEGHVGVSDQVTRPVPLNIVDDANTEKVPFSTNLHSVHENVKEEDIDSPGTATSKFVEPLPVSCGTGGGYVNFSQDLDSVPSAAVKYLIPCTARKDVIVPCVDGKTSLEVNDSMDILCGTIISSNKECANKASEVFDNLLPKDCCKIGRMGTSSDTCNQTLIREKFVEKKRLARFKERVIALKFRALHHLWKEDMRLLSIRKCRPKSHKKNELSVRTTCNGNQKNRSSIRSRFPFPAGNHLSLVPTSEIINFTSKLLSESQVKVQRNTLKMPALILDEKEKTISKFVTSNGLVEDPLAIEKERSLINPWTPQEREIFLEKFAVFGKNFRKIASFLDHKTTADCVEFYYKNHKSDCFEKLKKQDVGKLGKTYSAKTDLVASGKKWNRELNAASLEILSAASLMAGGIAGNKKIRAGSSLLGGYGKVKTSRVEDFIEKSGSFDILGDERETAAAADVLAGICGSLSSEAIGSCITSSVDAVEGSRDRKFLKVNPLYKLPLTPDVTQDVDDETCSDESCGEMDATDWTDDEKAAFLQAVSSFGKDFAKIARCVGTRSQEQCKVFFSKGRKCLGLDLMRPIPENVGSPVNDDANGGESDTDDACVVETGSMVETEKSGTKTDEDLPFYGTKTFNDDSNPVQARNMSAELDESKGTDGTEVDIEDANVVSDACAIDIDSKLGCDVSKFALCGSVSGQTTVIMSNSTEIRRDKANKLKSVPDTSSEPCEINSFVEDRMVVSEVSSGRPGNELERQRVSSPRCHDDRDSKQEADSGVIVDLKSPVHILSTMVNAPVSSFGNSCSGLTSSTENKHVAIGQPHTSPLSVDEHQASSNSFLQNTVASDIQCEKTASQDRLSSTCDIQVSTDEQPPITGISSDHVDTGSILQGYPMQAPIKKEMNDDMNCSSSAAELHLLSQKIEQPDDQTKKLQSLDSDKTSRNGDVKLFGKILTNPSSAQKHNVGAKGSEENGTHSHKFSKPSGVKFTGHNADGNLKILKFDCNDYVGLENVPMRSYGYWDGNRIQTGLSSLPDSAILLAKYPAAFSNYPTTPSAKLEQPSLQTFSKNNNEQLLNGSNAAVIDYQMFRRDGPKVQPFMVDVKHCQDVFSEMQRRNGFEAISSLQQQSRGVMGMNGVGRPGILVGGSCSGVSDPVAAIKMHYSNSDKYGGQSGSIAREDESWGGKGD 1647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00836 1647 CDD SANT 994 1032 IPR001005 -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 78 112 - -
Vian3g00836 1647 Pfam Myb-like DNA-binding domain 993 1032 IPR001005 -
Vian3g00836 1647 Pfam Myb-like DNA-binding domain 778 819 IPR001005 -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 17 45 - -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 1627 1647 - -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 117 133 - -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 1382 1403 - -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 17 266 - -
Vian3g00836 1647 SMART sant 775 823 IPR001005 -
Vian3g00836 1647 SMART sant 990 1038 IPR001005 -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 1419 1447 - -
Vian3g00836 1647 Coils Coil 221 241 - -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 198 221 - -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 1078 1106 - -
Vian3g00836 1647 SUPERFAMILY Homeodomain-like 762 822 IPR009057 -
Vian3g00836 1647 ProSiteProfiles SANT domain profile. 992 1032 IPR017884 -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 1218 1238 - -
Vian3g00836 1647 ProSiteProfiles SANT domain profile. 774 825 IPR017884 -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 1206 1239 - -
Vian3g00836 1647 Gene3D - 967 1045 - -
Vian3g00836 1647 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1644 - -
Vian3g00836 1647 Coils Coil 421 448 - -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 234 258 - -
Vian3g00836 1647 MobiDBLite consensus disorder prediction 156 170 - -
Vian3g00836 1647 Gene3D - 755 827 - -
Vian3g00836 1647 SUPERFAMILY Homeodomain-like 992 1040 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00836 Vian-Chr3 8796442 8803519 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g00836 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00836 - - gmx:100810588 2659.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00836 3 8796442 8803519 Vian3g00836 3 8796442 8803519 ECH