Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00831 ATGGGTAAAGAGAAGGTTCATATCAACATTGTGGTGATTGGCCATGTGGACTCTGGAAAGTCCACTACCACGGGTCACCTCATCTACAAGCTTGGAGGTATTGACAAACGTGTGATAGAGAGATTCGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGAATCACCATTGACATTGCTCTCTGGAAATTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAATATGATTACTGGGACATCCCAAGCTGATTGTGCTGTTCTTATTATTGATTCCACCACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGACAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAGATGATTTGCTGCTGTAACAAGTTAACTTTTGAAATTCTCAATTCTTTGTCTCTGGCTCTCTTGAGTAGATGGATGCTACTACGCCTAAGTACTCCAAGGCAAGATAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACTCTTCTGGAGGCTCTTGATCAGATCAATGAGCCAAAGAGGCCATCAGACAAGCCTCTTAGGTTGCCCCTCCAGGATGTGTACAAGATTGGAGGAATTGGAACTGTGCCTGTCGGACGTGTTGAAACTGGTGTCTTGAAACCTGGAATGGTTGTTACCTTTGCACCCACTGGACTGACAACTGAAGTTAAGTCCGTGGAGATGCACCACGAAGCACTCACTGAGGCTCTTCCCGGTGACAATGTGGGATTCAACGTGAAGAATGTTGCTGTGAAGGATCTGAAACGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCGAAGGAGGCTGCAAATTTCACGTCCCAAGTTATCATCATGAATCATCCTGGGCAGATTGGAAATGGCTATGCACCTGTTCTTGACTGCCACACCTCCCACATTGCCGTGAAGTTTGCCGAACTCGTGACCAAGATTGACAGGCGGTCTGGTAAAGAGCTGGAGAAGGAGCCTAAATTCCTGAAGAACGGAGATGCTGGTTTTGTGAAGATGATTCCCACAAAGCCCATGGTGGTTGAAACCTTCTCTGAATATCCTCCACTTGGTCGTTTTGCTGTGAGAGACATGCGTCAGACTGTGGCTGTTGGTGTCATCAAGAGCGTGGAGAAGAAGGACCCTACTGGAGCTAAGGTCACCAAGGCTGCACAGAAGAAGGGCAAATGA 1296 0.473 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKLTFEILNSLSLALLSRWMLLRLSTPRQDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAQKKGK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00831 431 CDD EF1_alpha_II 213 303 - -
Vian3g00831 431 Pfam Elongation factor Tu GTP binding domain 6 155 IPR000795 GO:0003924|GO:0005525
Vian3g00831 431 Pfam Elongation factor Tu domain 2 231 296 IPR004161 GO:0005525
Vian3g00831 431 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 309 412 IPR009001 -
Vian3g00831 431 PANTHER TRANSLATION FACTOR 4 416 - -
Vian3g00831 431 FunFam Elongation factor 1-alpha 306 413 - -
Vian3g00831 431 Pfam Elongation factor Tu C-terminal domain 304 412 IPR004160 -
Vian3g00831 431 FunFam Elongation factor 1-alpha 1 163 - -
Vian3g00831 431 Gene3D Translation factors 306 413 - -
Vian3g00831 431 Gene3D - 1 211 IPR027417 -
Vian3g00831 431 CDD EF1_alpha 9 210 - -
Vian3g00831 431 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Vian3g00831 431 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Vian3g00831 431 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Vian3g00831 431 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Vian3g00831 431 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Vian3g00831 431 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Vian3g00831 431 Gene3D Translation factors 212 299 - -
Vian3g00831 431 SUPERFAMILY Translation proteins 214 304 IPR009000 -
Vian3g00831 431 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 213 IPR000795 GO:0003924|GO:0005525
Vian3g00831 431 FunFam Elongation factor 1-alpha 212 299 - -
Vian3g00831 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 232 IPR027417 -
Vian3g00831 431 CDD EF1_alpha_III 306 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00831 Vian-Chr3 8762201 8763766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00831 1 423 Eukaryotic Initiation Factors Gene Family AT5G60390 87.727 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00831 K03231 - gmx:100801611 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00831 3 8762201 8763766 Vian3g00831 3 8762201 8763766 ECH