Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00828 ATGGGGAGGAAAGGGTGGTTTTATTCAGTGAAGAAAGTTTTCTTTTCTGATTCCAAAAAGGAACAGAAACATTCTCAGCAACAACATCATCCTAAGCCACCAAAGTTAGGATGTTTTGGGGCTTATCACCCAGATGATCTAGAAGGAGCACCAATTGCTGTTGTTCCCTCACTTCCACCAAGAAAAGACACCACACCAAGAAGTGTGCCAGAGAATGAACAGAACAACCAAGCCTTTTCTTTGGTTTTGGCTACTGCCGTGGCTGCAGGGGCTGCTGTAGCTGCTGCTGCAGAGGTTTCTCGTCTCTCAACCACGAGTCGTCAAAATGTAAAATTGAATGAAGACATGGCTGCTACCACCATTCAAACAGCTTACCGTGGATATTTGGCAAGAAGATCCTTGCGAGGCTTGAGAGGTTTGGCGAGGTTGAGAACATTGGTGCAAGGGCAATCTGTTCAAAGGCAAGCAGCTACTACCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGATTCGTGCAAGGAAGGTCAGAATGTCTGAGGAGAATCAGACTCTTAACCGGCAACTGCTGCAGAAACGTGAAAAGGAATTGGACAAGTTGCAAGCTAACCAAATTGGAGAAAAATGGGACGATAGCTCGAAATCAAAGGAGCAAGTTGAGGCAAAGCTGTTGAACAGGCAAATAGCAGCTATGAGAAGACAAAAGGCCCTGGCATATGCATCAACACATCAGCAAACAAGGAGGAACTCTTCAAAATCTGCCACAAATGCTACATTTATGGATCCAAACAATCCCCACTGGGGCTGGAACTGGCTAGAGCGATGGATGGCTACTAGGCCATGGGAAGATCAAAACACTACCTACCACATTGGTCATGCATCTGCCAAGAGTGCTGCAAGAAACACCATGTCAGTTGGTGAAATCACAAAATTGTACTCTCTCCGTGACCAGAACAATGATGTCAAAACAACCCCAGAAAACCAAAATCCAAAATCCCCTCAAAAAAGAGCCCGAAGGGTCTCGCTAACCAATGTAACAAGGCCAAAGGGACCAAGTGGTTCATGGGGTGGTGAAGGTGATTCAAAATCCATGTTCTACAAAGTCCATGAAAACAATCGCAGGCATAGCATTGGAGTGTCACCACTGAATGATGACGAGATCCCTTCAAGCTCTTCACCTGCTTTCCCAAGTCACACAACACCATCCACCCAGGTTGCAAAGGCCAAGCCATCATCCAAAGGGAGAAGTGCATCACAAAGAAATACAACACCCGAAAAAGTAGCTTCTGCTCCTTTAAAGAAGAGACTCTCTTTCCCTTCTTCTCCAGCCGGTGCAAGAAGGTATTCTGTTTCAACCAGGCCTGGAAATGTGGCTTCCAACAAGAGTGTTGCTAATGGTTCCACCCCTGAAGAGAAAATGAGAGTGAGAAGGTAG 1440 0.459 MGRKGWFYSVKKVFFSDSKKEQKHSQQQHHPKPPKLGCFGAYHPDDLEGAPIAVVPSLPPRKDTTPRSVPENEQNNQAFSLVLATAVAAGAAVAAAAEVSRLSTTSRQNVKLNEDMAATTIQTAYRGYLARRSLRGLRGLARLRTLVQGQSVQRQAATTLQCMQTLSRLQSQIRARKVRMSEENQTLNRQLLQKREKELDKLQANQIGEKWDDSSKSKEQVEAKLLNRQIAAMRRQKALAYASTHQQTRRNSSKSATNATFMDPNNPHWGWNWLERWMATRPWEDQNTTYHIGHASAKSAARNTMSVGEITKLYSLRDQNNDVKTTPENQNPKSPQKRARRVSLTNVTRPKGPSGSWGGEGDSKSMFYKVHENNRRHSIGVSPLNDDEIPSSSSPAFPSHTTPSTQVAKAKPSSKGRSASQRNTTPEKVASAPLKKRLSFPSSPAGARRYSVSTRPGNVASNKSVANGSTPEEKMRVRR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00828 479 MobiDBLite consensus disorder prediction 446 469 - -
Vian3g00828 479 Gene3D iswi atpase 111 138 - -
Vian3g00828 479 MobiDBLite consensus disorder prediction 18 37 - -
Vian3g00828 479 MobiDBLite consensus disorder prediction 316 352 - -
Vian3g00828 479 MobiDBLite consensus disorder prediction 54 73 - -
Vian3g00828 479 MobiDBLite consensus disorder prediction 378 479 - -
Vian3g00828 479 SMART iq_5 113 135 IPR000048 GO:0005515
Vian3g00828 479 MobiDBLite consensus disorder prediction 239 264 - -
Vian3g00828 479 Coils Coil 216 236 - -
Vian3g00828 479 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Vian3g00828 479 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Vian3g00828 479 MobiDBLite consensus disorder prediction 240 264 - -
Vian3g00828 479 MobiDBLite consensus disorder prediction 385 428 - -
Vian3g00828 479 Coils Coil 177 197 - -
Vian3g00828 479 MobiDBLite consensus disorder prediction 316 363 - -
Vian3g00828 479 PANTHER IQ-DOMAIN 5-RELATED 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00828 Vian-Chr3 8739955 8742109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00828 1 469 IQD Protein Family AT5G03040 40.862 4.99e-91 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00828 - - vun:114190307 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00828 3 8739955 8742109 Vian3g00828 3 8739955 8742109 ECH