Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00825 ATGTACTACAAACTCAAAACCACCACCACAACAACACCAACAACAACAACTTCTTCACCAATCCCAATCAATCTTCCCACTATGCTCTCAAACTCTCCTCCATCTTCATCTTCTTCCCCTCCCTCACACTCTCCCACACCTTTCCCTTCACCCTCTCAGGGATCTCCAGCTCCTGCTCCGCCTTCTCCGCCGCCGCCTGTGGTCGTTAGCCCCTGTGCTGCCTGCAAGATTCTCCGCCGCAGGTGCGTCGAGAAGTGTGTCCTGGCTCCCTATTTCCCTCCCACCGATCCCCTCAAATTCACCATTGCTCACAGAGTCTTTGGAGCAAGCAACATCATCAAGTTCTTGCAGGGGAAGAAAGCATTGAACTGTGATGGCATAGCAGCAATTGAGTTACCAGAGTCCCAGAGAGCAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCTAGGATCAGAGACCCAGTTTACGGGTGTGCAGGAGCAATATGCCAACTTCAGAAGCAAGTGAGCGAGCTTCAAGCACAGTTGGCAAAAGCACAAGCTGAGGTAGTGAACATACAGTGCCAACAAGCGAATTTGGTGGCTCTAATCTGCATGGAAATGAGTGAAACGCAGGAGCAGCACATGGTGCAGCCTCAACCTCACATTGACATGAGCTGCTTCATAGAGGACAACAGTTTTGGAACTGCTTGGGAGCCTCTTTGGACATGA 714 0.507 MYYKLKTTTTTTPTTTTSSPIPINLPTMLSNSPPSSSSSPPSHSPTPFPSPSQGSPAPAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQGKKALNCDGIAAIELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNIQCQQANLVALICMEMSETQEQHMVQPQPHIDMSCFIEDNSFGTAWEPLWT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00825 237 ProSiteProfiles LOB domain profile. 70 184 IPR004883 -
Vian3g00825 237 MobiDBLite consensus disorder prediction 1 37 - -
Vian3g00825 237 Coils Coil 163 190 - -
Vian3g00825 237 MobiDBLite consensus disorder prediction 1 63 - -
Vian3g00825 237 Pfam Lateral organ boundaries (LOB) domain 71 181 IPR004883 -
Vian3g00825 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 70 206 - -
Vian3g00825 237 MobiDBLite consensus disorder prediction 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00825 Vian-Chr3 8712869 8714111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00825 67 237 AS2 family AT1G07900 65.909 4.83e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian3g00825 LOB 7.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00825 - - vra:106771364 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00825 3 8712869 8714111 Vian3g00825 3 8712869 8714111 ECH