Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00818 ATGTCTGGCAACTCCAATTGCAGTGTTTACATAGGCAATCTAGATGAGAGGGTGACAGAGAGAGTCTTGTATGATATATTAATCCAAGCAGGACGAGTGGTAGATTTGCACATTCCTAAAGATAAGGAAACTGAGAAACCGAAAGGTTATGCCTTTGCAGAATATGAAACTGATGAGATTGCAGATTATGCTGTCCGACTTTTCTCGGGCCTTGTAACTCTCTATAACAGAACACTCAAGTTTGCAATGTCTGGGAGAGACAAGACTACACTTAATGGCTCTACAGCAGTTACCCCCACATCAAATTCTTCTCAAAGACCAAGGCCATATGCAGTCGCAATAAATAATTCAGAAAATTTCCAGCACCCTGCCAGGCTATCAACTTCTGATCGATTTTCAGATTATGCAGTAAATCATTCCCAAGTTCCTCCTATTCGTGTAACTAGTGGGAATGGATCTCACTATAGTGGCAACAATTATGAATACAGCAGGAGAGCTTTTGGGGCAACATTGGATAGCATTAGCCGTAATAGGTCACGCCGCTTTGATAGAAGTAGCCCAATCTCTTACCCACATTACTAA 582 0.4158 MSGNSNCSVYIGNLDERVTERVLYDILIQAGRVVDLHIPKDKETEKPKGYAFAEYETDEIADYAVRLFSGLVTLYNRTLKFAMSGRDKTTLNGSTAVTPTSNSSQRPRPYAVAINNSENFQHPARLSTSDRFSDYAVNHSQVPPIRVTSGNGSHYSGNNYEYSRRAFGATLDSISRNRSRRFDRSSPISYPHY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00818 193 Gene3D - 2 95 IPR012677 -
Vian3g00818 193 SMART rrm1_1 8 82 IPR000504 GO:0003723
Vian3g00818 193 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Vian3g00818 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Vian3g00818 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Vian3g00818 193 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 190 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00818 8 87 Eukaryotic Initiation Factors Gene Family AT1G49760 32.500 2.34e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00818 K12831 - gmx:100803118 338.191