Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00812 ATGGAAGATTCAGAGGAGGATGAGCTTTTGAACCTTAGCCTTTCAGTTGCTGCGGATAGGGAAAGGAAAAAGAAGGGAAAGATAATTAGGGAACATAACGTCTCTATGAGTAGTGCTACTGCTAGGAAATCCTATGAAAGCTATGAAGGGAAGATATTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCATAGGAGGAAAGGAGTTGTAGAAGATGGGAGTGGCCTCCCCTTGATCCATTTGCTGCTCTCAACAGCAACTGCTGTTGATGACAACAACTTGGATTCATCCTTAGAGAATCTCACTGATTTGTACCAAACTGTTTCCCTAACAGGTGACTCGGTTCAGCGTGTGGTAGCTTATTTTGCTGATGGTTTGGCCGCAAGGCTTCTCACAAGGAAATCCCCATTCTACGACATGCTCATGGAAGAACCAACAACTGAGGAAGAGTTAAATGCATTCACAGATCTCTACAGGGTTTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCTATCTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGCGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAGTCTCTCTCGGAGAAGGCAACTACCGGCAACCGCATATCCCTCAGGATAACCGGATTCGGGAAGAATCTCAAAGAGCTTCAAGAAACTGAGTCTAGATTGGTTAGTTTCTCAAAGGGTTTTGTCAGTCTTGTGTTTGAATTCCAAGGGCTGCTAAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAATGAAACGGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTTATGAAGATCTCTGACACATTGGAATTTGTTCATTCCCTTAATCCCTCCATTGTTGTGGTGGTGGAGCAAGAGGGCAGCAGGAGTCCTAGGAGCTTCTTGTCAAGGTTCACAGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTGGATGATTGTCTCCCACTAGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTCTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGATGGTGTGGATTGTCCAAAGTATGAAAGGATGGAAACATGGAAAGCAAGAATGGAGAATCATGGGTTTGTTGCCACCAAAATAAGCTCAAAGTCAATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACCCATTATTGTCCTCTTCAGTTTGAGGAAGAAGGAGGTGGAGGTTTCAGGGTTTCCGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTCACAGTCTCAGCATGGCAATCAGTCTGA 1386 0.4444 MEDSEEDELLNLSLSVAADRERKKKGKIIREHNVSMSSATARKSYESYEGKIFRLLQMREQMLRQDHRRKGVVEDGSGLPLIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTTEEELNAFTDLYRVSPYYQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATTGNRISLRITGFGKNLKELQETESRLVSFSKGFVSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLEFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGVDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00812 461 Pfam GRAS domain family 81 459 IPR005202 -
Vian3g00812 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 454 IPR005202 -
Vian3g00812 461 Coils Coil 351 371 - -
Vian3g00812 461 ProSiteProfiles GRAS family profile. 72 459 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00812 Vian-Chr3 8528333 8529718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00812 89 458 GRAS Transcription Factor Family AT3G54220 35.092 2.90e-55 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian3g00812 GRAS 1.1e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00812 - - gmx:100809458 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00822 8 18362872 18364263 Vian3g00812 3 8528333 8529718 PCT