Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00810 ATGAATCCAAAAGGAGGCTTATGTGCTAATAACTGCAAAACGTCCTCAGAGCCTCCCTCTTTCTATGGTTTCGGAATTGAATCACCTTTCAATGAATTCAACCCTCCCTCTCTTCCAATCCAATCTGTACTTCCAGGTCAATCTAACACAGATGTTGAGATCCCTGACCAAGAAAATTGTCCACTAAGTGACTCATCAAATACCAGCAAGCTCCAAGATTGGAATCCAGGTGCAATGTTGAACAATCTTTCGTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCCTTTGGACAATCTCACGAACTAGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCTGGAAGTCTTCTTCCCTCTGTTAGGCACACCCTCACTACAAATCCCTTGGTTGGCCAGATTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGAACCAAGTACTGCCATTAACCTACAAAATAATAGTGGAAATAAACTGTTCGATAAGTCCACTCCGAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTATAACATGGAAGAACACGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCCGGTTCCTATGAGATTTTACAGTTGGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCGCATAAAGAAACCGGGTCCGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGCGAACGCACTGTGACAAGAGCTATATTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGATGACACCAAAGCAGTGGCCGAGCCACCTGATCCCCAGAACCGAGAATGCAGCAGCAATAAGGTAGGAAGTGTGAACTTCTGTTTTGGATCAAAGCCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTGTGAATTATTTCTCGTCGCTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAGTGAATTCCCTCAAACTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGGTACTAAATTTGGTGGCGGTGAATCAAGTTCCGACAATCTGTTGTGA 1497 0.4248 MNPKGGLCANNCKTSSEPPSFYGFGIESPFNEFNPPSLPIQSVLPGQSNTDVEIPDQENCPLSDSSNTSKLQDWNPGAMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQSHELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHTLTTNPLVGQIDQLHGINLPFGSEPSTAINLQNNSGNKLFDKSTPNDLPNTCEMEQNYNMEEHEPKDEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKAVAEPPDPQNRECSSNKVGSVNFCFGSKPSSENVVQNMMDMKGNIDDPVNYFSSLNFEGCNFGAFSEFPQTPFEDSEGSFSFLMSGSFNYGTKFGGGESSSDNLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00810 498 SMART c2h2final6 331 353 IPR013087 -
Vian3g00810 498 SMART c2h2final6 293 326 IPR013087 -
Vian3g00810 498 SMART c2h2final6 244 266 IPR013087 -
Vian3g00810 498 SUPERFAMILY beta-beta-alpha zinc fingers 242 269 IPR036236 -
Vian3g00810 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Vian3g00810 498 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 66 468 IPR044300 GO:0010044|GO:0010447
Vian3g00810 498 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Vian3g00810 498 Gene3D Classic Zinc Finger 228 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00810 Vian-Chr3 8513933 8515429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00810 212 498 C2H2 Transcription Factor Family AT1G34370 68.836 2.78e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g00810 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00810 3 8513933 8515429 Vian3g00810 3 8513933 8515429 ECH