Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00802 ATGGAATCATGTGTGCCTCCAGGATTCAGATTTCATCCAACAGAAGAGGAGCTTGTGGGGTACTATCTCAAGAGGAAGATAAACTCCCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATCGAACCCTGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCTACAGGAACAAGAACTAACAGAGCCACTGCTGCTGGATTCTGGAAAGCAACTGGAAGGGACAAGGCTGTTATGACCAAAAATAGAATCATAGGGATGAGAAAGACCTTGGTCTTCTACAAGGGACGTGCCCCTAATGGAAGGAAAACGGACTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGGTCCTCCACAGGCAAAAGGATGGGTCGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCAAGGTTATGAAGCATGGTGCAGTAGTAGTAGCCATCAACAACACTTTTACAAAGATCAAAGCTTTGCAAGACCCTTATCAATTGCTGATATTTTGAATGAAACAAATGTGCCTCATCACCCTGCAGAAGCTCCAAGCTTTAGTCTTCCTTTCAACTCAGATCAGCAACACTTTATTCTGCCAAACCAAACTGTCATGGACAAACAGCTGATTGAGCTTCCTCAGCTAGATAGTCCAACTGCAAGTTTTGCAATGAAGGAGTGTAACCAACAACACCAGAATGGCCTCAGAAATGAGGAATATTGTAGTGATGAAAGGAGCAATAGCAGTGCGCAAGGTATCGATTGGAAGAGTTTGGACAACTTGTTCGGGTCACAATTGAGTGACACAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCCCATAATAACCATGATCAAGCTAGTCATATCCTAGGATGCTTCCCTGATTCATAG 963 0.4278 MESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMTKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQAKGWVVCRAFRKPSPSHRQGYEAWCSSSSHQQHFYKDQSFARPLSIADILNETNVPHHPAEAPSFSLPFNSDQQHFILPNQTVMDKQLIELPQLDSPTASFAMKECNQQHQNGLRNEEYCSDERSNSSAQGIDWKSLDNLFGSQLSDTAYFSHPNLPLMMPHNNHDQASHILGCFPDS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00802 320 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 246 - -
Vian3g00802 320 Gene3D NAC domain 14 157 IPR036093 GO:0003677|GO:0006355
Vian3g00802 320 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Vian3g00802 320 FunFam Nac domain-containing protein 86 14 157 - -
Vian3g00802 320 Pfam No apical meristem (NAM) protein 6 132 IPR003441 GO:0003677|GO:0006355
Vian3g00802 320 ProSiteProfiles NAC domain profile. 5 154 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00802 Vian-Chr3 8436586 8439829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00802 1 320 NAC Transcription Factor Family AT1G71930 54.438 4.23e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian3g00802 NAM 8.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00802 - - var:108325420 672.159