Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00799 ATGTCAAAAGATTGGAGCGCATCAAAGAGCAAAAATGTGTTGCCGCACGAGACCCCGGACCTATTGGAGCACTACATTGTGGGGCAGAAGGTGCTGGGAAAAGGGCGCTTGGCCACCACCTACGTGTGCACCCACAACGAGACAAGGAAGACTTACGCGTGCAAAACCATCCCAAAGACGAAGCTTTTGTGCCAAGAGGAGTACGATGATGTGTGGAGGGAGGTTCAGATCCTGCACCATTTGTCGGAGCACCCCAACGTGGCAAGGATACAGGGAAGCTACGAGGACAAGTTTGCAGTGCACCTTGTGATGGAGCTGTGTCGTGGGGGTGAGCTTTTCTATAGGATCACTCAGAAGGGGTATTTCAGCGAGCGAGAGGCTGCCAAGTTGATGAAGACCATTGTTGGGGTGGTGGAAGTGTGCCACGCTCATGGGGTCATTCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCATCGCCACGGATGCCACCCTCAAGGTTATCGATTTTGGTTTCTCTGTCTTCTTTAAACCAGGACAAACCTTTAGTGATATAGTAGGAACTTGCTACTATATGGCCCCAGAGGTGTTGGGCAGACAGTCTGGACCAGAAGTGGACGTTTGGAGTGCTGGTGTTATTCTATACACCTTACTGAGAGGGCTTCCACCTTTCTGGGCAAAATCCGAATCAGGAGTTTTCAAACAGATTTTGCATGCAGAAGTTGATTTTGCATCTCATCCGTGGCCAAGTATATCAGGAAGTGCTAAAGATTTGATAAAGCAGATGTTGGATAAGGACCCCAAGAAAAGAATTTCCGCTCATGAAGTCTTGTGTCACCCTTGGATTGTTGATGACAGTGTTGCCCCGGACAAACCTCTGGATCCTGCTGTTTTGACGCGCCTAAAGCATTTCTCAACAATGAATAAACTTAAGAAGATGGCGATACGTGTCATAGTAGAAAGACTTTCAGAGGAGGAAATAGGTGGATTAAAAGAGATATTTAAAATGATTGACGAAGACAATAGCGGGACAATCACTTTTCAGGAACTCAAAGATGGTTTGAAAAGTGTGGGATGTGATCTCATGGAATCTGAAATTAGATCCCTTATGGATGCGGCTGATATAGACAACAATGGAACAATAGACTATGGTGAATTTCTCGCAGCTACAATGCACTTGAATAAGATGGAAAGAGAAGAGAATTTAGTTGCTGCTTTTTCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAACAGGCTTGTAAAGACTTCGGCCTTGGTGAGTTGCATCTGGATGAGATGATCAAAGAGATTGATCAAGACGATGTAAGTTCCTCTGATCAATAG 1368 0.4518 MSKDWSASKSKNVLPHETPDLLEHYIVGQKVLGKGRLATTYVCTHNETRKTYACKTIPKTKLLCQEEYDDVWREVQILHHLSEHPNVARIQGSYEDKFAVHLVMELCRGGELFYRITQKGYFSEREAAKLMKTIVGVVEVCHAHGVIHRDLKPENFLFDTIATDATLKVIDFGFSVFFKPGQTFSDIVGTCYYMAPEVLGRQSGPEVDVWSAGVILYTLLRGLPPFWAKSESGVFKQILHAEVDFASHPWPSISGSAKDLIKQMLDKDPKKRISAHEVLCHPWIVDDSVAPDKPLDPAVLTRLKHFSTMNKLKKMAIRVIVERLSEEEIGGLKEIFKMIDEDNSGTITFQELKDGLKSVGCDLMESEIRSLMDAADIDNNGTIDYGEFLAATMHLNKMEREENLVAAFSYFDKDGSGYITIDELQQACKDFGLGELHLDEMIKEIDQDDVSSSDQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00799 455 ProSitePatterns EF-hand calcium-binding domain. 340 352 IPR018247 -
Vian3g00799 455 CDD EFh 404 448 IPR002048 GO:0005509
Vian3g00799 455 Gene3D Phosphorylase Kinase; domain 1 27 111 - -
Vian3g00799 455 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00799 455 FunFam Calcium-dependent protein kinase 1 292 454 - -
Vian3g00799 455 FunFam Calcium-dependent protein kinase 5 112 292 - -
Vian3g00799 455 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 448 - -
Vian3g00799 455 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Vian3g00799 455 FunFam Calcium-dependent protein kinase 1 28 111 - -
Vian3g00799 455 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00799 455 Gene3D - 293 452 - -
Vian3g00799 455 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00799 455 CDD EFh 332 391 IPR002048 GO:0005509
Vian3g00799 455 ProSiteProfiles EF-hand calcium-binding domain profile. 327 362 IPR002048 GO:0005509
Vian3g00799 455 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Vian3g00799 455 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Vian3g00799 455 SUPERFAMILY EF-hand 323 448 IPR011992 -
Vian3g00799 455 Pfam EF-hand domain pair 332 392 IPR002048 GO:0005509
Vian3g00799 455 Gene3D Transferase(Phosphotransferase) domain 1 112 292 - -
Vian3g00799 455 Pfam EF-hand domain 404 431 IPR002048 GO:0005509
Vian3g00799 455 ProSitePatterns EF-hand calcium-binding domain. 376 388 IPR018247 -
Vian3g00799 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vian3g00799 455 SMART efh_1 403 431 IPR002048 GO:0005509
Vian3g00799 455 SMART efh_1 331 359 IPR002048 GO:0005509
Vian3g00799 455 SMART efh_1 367 395 IPR002048 GO:0005509
Vian3g00799 455 CDD STKc_CAMK 24 283 - -
Vian3g00799 455 SUPERFAMILY Protein kinase-like (PK-like) 14 309 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00799 Vian-Chr3 8414777 8418806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00799 1 449 EF-hand Containing Proteins AT4G09570 71.492 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian3g00799 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00799 K13412 - gmx:100811596 793.497