Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00791 ATGGGTACGTTGAATCTACTCTTGTTCTTCTCTTTGGTGAGTCTGTGTGCTATGGCTGCTGCAAAGGTGGTGCTTATTGGGAACAATATTACTGTGTCCTTCGATGATATTGAAGCTAATTTTGCTCCAACAGTCAAAGGTTCTGGAGAGTATGGGGTCTTATATTTGGCAGAGCCACTTGATGCGTGTACAGACCTGACAAATAAAGTTGAACGACTTCCCAATGTGAGTTCACCTTTTGCTTTGGTCGTTAGAGGGGGATGTAGCTTTGAGGAGAAAGTCAGAAGGGCACAAAAGGCTGGCTTCCAAGCTGTAATTGTCTATGATAATGAAGAAGACGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGGATAAGAATACATGCAGTATTTGTATCTAAAGCTTCGGGTGAAATACTAAAGAAATATGCTGGGTGGCCTAATGTGGAAATATGGTTAATTCCAACTTTTGAAAACTCGGCATGGTCTATCATGGCAATTTCATTTATCTCCCTACTCGCAATGTCTGCAGTGCTGGCCACTTGTTTCTTTGTCCGCAGACATCGCATAAGAAGAGAAAGGCCTCGGGGTTCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGACAACTGTACATCAAGGACATGTGCTATATGCCTTGAAGACTATTGTGTTGGCGAGAAGATCAGGATTCTTCCGTGCTGTCACAAGTTTCATGCTGCATGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAACTGGCTTAACTGATCCACCTCCTTCAGAATCCACACCCTTGCTCTCATCAAGCCCAGCATCTATGGCATCCTCTGTCTTATCTTCTGTGAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCTTCACAGACCACATCTGTTTCCCGTAACCACTCTATTGCCAGTACACCTTATGTTCATCCATCAACATCACTTAGGTCATCCTACCATCAATCCCCCTCCCTAAGCATGAGCCGAAGCTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACATTCCATGGGATATCCTTCTATGCCATCCCTTAACTCAAGGTACATGTCCCCGTATATTCCAAGTCCAAGCAATGCTTCAGTGAGTTATTTGGGTTCATCCAGTCATCAACAACATCCTCTCCGTTATAGTGAGTCGGCTGCAAGCTTCTCACCATTTGCATCGACACACTCCCTTCCGGAATGTTAA 1338 0.441 MGTLNLLLFFSLVSLCAMAAAKVVLIGNNITVSFDDIEANFAPTVKGSGEYGVLYLAEPLDACTDLTNKVERLPNVSSPFALVVRGGCSFEEKVRRAQKAGFQAVIVYDNEEDGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGWPNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRGSLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKIRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSPASMASSVLSSVRSSLASSSAIQIARTASQTTSVSRNHSIASTPYVHPSTSLRSSYHQSPSLSMSRSSVDLRNASQRSLASHLNSPHSMGYPSMPSLNSRYMSPYIPSPSNASVSYLGSSSHQQHPLRYSESAASFSPFASTHSLPEC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00791 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 280 IPR013083 -
Vian3g00791 445 ProSiteProfiles Zinc finger RING-type profile. 233 275 IPR001841 -
Vian3g00791 445 SUPERFAMILY PA domain 75 163 IPR046450 -
Vian3g00791 445 Gene3D - 18 154 - -
Vian3g00791 445 CDD PA_C_RZF_like 19 162 IPR044744 -
Vian3g00791 445 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 193 280 - -
Vian3g00791 445 Pfam Ring finger domain 232 275 IPR001841 -
Vian3g00791 445 SUPERFAMILY RING/U-box 223 286 - -
Vian3g00791 445 SMART ring_2 233 274 IPR001841 -
Vian3g00791 445 MobiDBLite consensus disorder prediction 409 445 - -
Vian3g00791 445 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 157 290 - -
Vian3g00791 445 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 21 155 - -
Vian3g00791 445 MobiDBLite consensus disorder prediction 342 388 - -
Vian3g00791 445 Pfam PA domain 74 141 IPR003137 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00791 20 444 C3H Transcription Factor Family AT1G22670 48.260 1.62e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00791 K15692 - gmx:100791248 733.406