Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00782 ATGGACGGCAACCCCACCACCACTTCCTCCTCCGCACCACCTCCCGAGAATTTCAATTTCTCGCCCGATAGCCCCTCCCCGATCACCCTCACTGCGGATCAGGTCAGCCACTGCACCCAAGCCATCAACCTTTTGAAGGACAAACTCCAGGCTCCTCACACCATCAGTCGGGAGTTTGCACACTTGCAGGCAAACAGAATAACGCCGAGTGAGATGAGGAGAAGATGCACCGTCGCTCTTGACGGCGTCAATTTGAACAAAAACCGATACACGGACGTTTTGCCATTTGACAATAACAGGGTTGTTCTCAGATCGAGTTCGGATTATAGACCTGCAGCACAGGGGTATATCAATGCAAGCTTGGTCTCGACCTCCTCCTCTGGAAACGCGTCACAGTTTGTTGCCACACAAGGTCCACTTCCGCATACTTATGAAGATTTCTGGGAGATGATTATCCAATATCGCTGCCCTGCAATTATCATGCTAACAAGGTTGGTGGATAATTATAAGATGGTAAAGTGTGGAGATTATTTTCAAGCGGAGGATGGACCTAGAGAAGTTGGTAATATTTCTGTTATTGGTAAATGGGTGAACACTACTGAAACTTCACTGGTGCTGCGCCTTTTAGAGGTGAACCATAGAGAGGTAGAAGATGCTCCAATATCTGTTTTGCATATTCAGTATCCGGAATGGCCTGACCACGGAGTTCCCAAAGATACATTAGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCACCAAACCTTGGTCCAATAGTGGTCCACTGCAGTGCAGGTATTGGTAGAACTGGAACATATTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAGTAGCTGTGTTCAGGGCCCAGCGTGTTGGAATGGTTCAGACCCAGGATCAGTACATTTTCTGCTATAAAGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGTAG 1002 0.4621 MDGNPTTTSSSAPPPENFNFSPDSPSPITLTADQVSHCTQAINLLKDKLQAPHTISREFAHLQANRITPSEMRRRCTVALDGVNLNKNRYTDVLPFDNNRVVLRSSSDYRPAAQGYINASLVSTSSSGNASQFVATQGPLPHTYEDFWEMIIQYRCPAIIMLTRLVDNYKMVKCGDYFQAEDGPREVGNISVIGKWVNTTETSLVLRLLEVNHREVEDAPISVLHIQYPEWPDHGVPKDTLAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTVAVFRAQRVGMVQTQDQYIFCYKAIIDELEDLVSQQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00782 333 ProSitePatterns Tyrosine specific protein phosphatases active site. 262 272 IPR016130 GO:0016311|GO:0016791
Vian3g00782 333 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 244 316 IPR000387 GO:0016311|GO:0016791
Vian3g00782 333 SMART PTPc_3 54 327 IPR000242 GO:0004725|GO:0006470
Vian3g00782 333 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 47 327 - -
Vian3g00782 333 CDD PTPc_plant_PTP1 116 319 - -
Vian3g00782 333 FunFam Tyrosine-protein phosphatase non-receptor type 12 32 333 - -
Vian3g00782 333 Pfam Protein-tyrosine phosphatase 84 323 IPR000242 GO:0004725|GO:0006470
Vian3g00782 333 Gene3D Protein tyrosine phosphatase superfamily 28 327 IPR029021 -
Vian3g00782 333 PRINTS Protein tyrosine phosphatase signature 259 277 IPR000242 GO:0004725|GO:0006470
Vian3g00782 333 PRINTS Protein tyrosine phosphatase signature 115 122 IPR000242 GO:0004725|GO:0006470
Vian3g00782 333 PRINTS Protein tyrosine phosphatase signature 221 238 IPR000242 GO:0004725|GO:0006470
Vian3g00782 333 PRINTS Protein tyrosine phosphatase signature 292 307 IPR000242 GO:0004725|GO:0006470
Vian3g00782 333 PRINTS Protein tyrosine phosphatase signature 133 153 IPR000242 GO:0004725|GO:0006470
Vian3g00782 333 PRINTS Protein tyrosine phosphatase signature 308 318 IPR000242 GO:0004725|GO:0006470
Vian3g00782 333 SMART ptp_7 222 324 IPR003595 -
Vian3g00782 333 ProSiteProfiles PTP type protein phosphatase domain profile. 55 325 IPR000242 GO:0004725|GO:0006470
Vian3g00782 333 MobiDBLite consensus disorder prediction 1 26 - -
Vian3g00782 333 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 327 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00782 33 331 Protein tyrosine phosphatase (PTP) family AT1G71860 69.231 1.11e-163 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00782 - - gmx:548044 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00782 3 8226965 8231187 Vian3g00782 3 8226965 8231187 ECH